Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00102 ATGAAAGATATAATCTTCCTGCAAATGGGCACTGCCGAGGAGACTGTACAACACCTGCAATTCGATGTTGAAGACACTATCTTTGTTGCAGTGGGAACCGACGCCGACGACGCCAAAGCTACTCTCCTTTGGGCTGTCCAGAACTTTGCCTGCAAGACTTTTTGTCTGCTTCATGTTCATCAGCTTACCCCTCGAGCTACTTCTCCGAAACATGAAGATCCATCTTCCCATACACTAAAAGAACATGTAGCGAAGGCATTTGAGGACCTCCAAAGGCAAAAGTCTTTTGAACTTCTTAATCAATATGTTCTCATTCTTGCCAAACTGGGGGTACGAGCGCAAAAGATATTGATTGCGACGAACAGTGTCGAGAGGGGGATTGTTGAAATTATTGATCAGTACAGTATTAAATGGCTAGTCATGGGTTTAGATGCAGAAAGATACAATCTGAAGGAGGGTGGACCGGGAAGATTCAATAAGTTGCAGCTGCAGAACACGGAAATAGGAATCAACCATACAAACCATCTGAGACCAGAATCTGTGACTTGTAAATTGAATCTTCTAGATGCTCAAGAACAGGAGAATGCATTTGATAGCATAAGCAGGTTTATATATGAAGGTCAGACGGATCCAAAGTTCGAAAACCTGGGTACTTCAAGGACGACGCTATTGTTAAAGAACGAGGTGAGTGGTTTGCAAGAAGCAGCATCGATGAACGTTACGCCCATAAAAGAATTTGAAGGAGTGAAGGCTTGGATAGAGGAAGAAGCTGTAGATGCTGAATTCAAGGCTAAATCATTAGAAAGCTCGTGTGTGGAGGAGGTGAAGAGAAGAAATGAGATGGAAGAAATTTTAGCGAGTTCGAAAAAAGAAGTGGAAAGGATGAACAAAGAGCATGATAAGCTCTTGAAAGAACTGCACCGTGTCCACGAGCAGAAATCGTTACTTGAGAGAAAAGCGTCGGAGAGCCGGTGTGATGTGGAGGAGTTGGAGAAGAAGATGTTTGCAGCTGTTGACCTCTTAGTGAGCTTCAAGGAGAAACGAGATAAGTTGCAGATCGAGCAGGAAGATGCAACGAACGAGCTCCGAAAGCTGAAGAACATGGTTGAAAGGGAATCATCGTGTAATCGCCGTGCAGAAATGCCTACATTCTCCTTCATGGAGATAATTGAAGCAACGAGAAACTTTGACCCTTCCTGGAAGATTGGTGAGGGAAGACATGGCAGTGTTTATAAAGGCGTTCTTCGCCACATGGATGTCGCTCTAAAAATGTTTCCTTCGGTTAGGCATCCCAACCTGGTTTCAATTATTGGAGCATGTCCAGAATCCAGGTTAATAGTGTATGAGAATATGAAAAACAGCAGCTTGGAAGACCACCTTGCCTGCAAAAATCGACCACTTCCATGGCAGATACGGATTCGTGTTGCTGCTGATATCTGCTTGGCCCTTATATTTCTGCATTACAGCGAGCCCTGCATTGTCCATGGAGATATAAAGCCAAGCAAAATCCTACTTGATGCCAACTTTATAGCCAAACTAGCTGGAGACTGGCCACATGATCTAGCAGAACAGTTGGCTCTTGTGGCACTGCGGTGCTGCGAGAAGGAAAAGTCGAATCGGCCTGACCTCGTCTCGGAGTTGTGGAGTGTTTTGGAGCCAATGAGATCCATTGCCTCAGCCTCATGTTCAAGCTTGAAGAAACACTCTCGCGTGCCTGCCCATTTTGCTTGTCCCATATTTCAGGAAATTATGAAAGATCCACTCATTGCTGCTGATGGGTTCACATATGAAGCTGATGCAATAAGAGGATGGTTCGAAAGTGGGCACAACACTTCTCCGATGACAAATCTTAAAGTTGAGCACTGTAATCTTGTACCAAATTATGCTCTTTTGAATGCAATTCAAGAGTGGCAGCATCAGCTATGA 1926 44.34 MKDIIFLQMGTAEETVQHLQFDVEDTIFVAVGTDADDAKATLLWAVQNFACKTFCLLHVHQLTPRATSPKHEDPSSHTLKEHVAKAFEDLQRQKSFELLNQYVLILAKLGVRAQKILIATNSVERGIVEIIDQYSIKWLVMGLDAERYNLKEGGPGRFNKLQLQNTEIGINHTNHLRPESVTCKLNLLDAQEQENAFDSISRFIYEGQTDPKFENLGTSRTTLLLKNEVSGLQEAASMNVTPIKEFEGVKAWIEEEAVDAEFKAKSLESSCVEEVKRRNEMEEILASSKKEVERMNKEHDKLLKELHRVHEQKSLLERKASESRCDVEELEKKMFAAVDLLVSFKEKRDKLQIEQEDATNELRKLKNMVERESSCNRRAEMPTFSFMEIIEATRNFDPSWKIGEGRHGSVYKGVLRHMDVALKMFPSVRHPNLVSIIGACPESRLIVYENMKNSSLEDHLACKNRPLPWQIRIRVAADICLALIFLHYSEPCIVHGDIKPSKILLDANFIAKLAGDWPHDLAEQLALVALRCCEKEKSNRPDLVSELWSVLEPMRSIASASCSSLKKHSRVPAHFACPIFQEIMKDPLIAADGFTYEADAIRGWFESGHNTSPMTNLKVEHCNLVPNYALLNAIQEWQHQL 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 555543 560421 - Cp4.1LG14g06210.1 Cpe14g00102 480486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00102 641 SUPERFAMILY RING/U-box 569 640 - -
Cpe14g00102 641 CDD RING-Ubox_WDSUB1_like 575 616 - -
Cpe14g00102 641 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 26 142 - -
Cpe14g00102 641 Gene3D HUPs 13 144 IPR014729 -
Cpe14g00102 641 Coils Coil 278 333 - -
Cpe14g00102 641 PANTHER OS02G0152300 PROTEIN 514 639 - -
Cpe14g00102 641 PANTHER OS02G0152300 PROTEIN 20 513 - -
Cpe14g00102 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 570 641 IPR013083 -
Cpe14g00102 641 SUPERFAMILY Protein kinase-like (PK-like) 372 514 IPR011009 -
Cpe14g00102 641 ProSiteProfiles U-box domain profile. 570 641 IPR003613 GO:0004842|GO:0016567
Cpe14g00102 641 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 514 639 - -
Cpe14g00102 641 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 20 513 - -
Cpe14g00102 641 Pfam U-box domain 571 639 IPR003613 GO:0004842|GO:0016567
Cpe14g00102 641 Coils Coil 341 368 - -
Cpe14g00102 641 Pfam Protein tyrosine and serine/threonine kinase 422 514 IPR001245 GO:0004672|GO:0006468
Cpe14g00102 641 ProSitePatterns Protein kinases ATP-binding region signature. 402 423 IPR017441 GO:0005524
Cpe14g00102 641 ProSiteProfiles Protein kinase domain profile. 396 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe14g00102 641 Gene3D Transferase(Phosphotransferase) domain 1 383 517 - -
Cpe14g00102 641 SMART Ubox_2 574 637 IPR003613 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00102 - - - csv:101211339 715.687
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00082 Cpe14g00102 CCT
Cpe13g00095 Cpe14g00102 CCT
Cpe13g00095 Cpe14g00102 ECH
Cpe09g00082 Cpe14g00102 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00102 Cpe-Chr14:555543 Cpe08g00548 Cpe-Chr8:3585977 2.43E-12 dispersed
Cpe14g00102 Cpe-Chr14:555543 Cpe03g01733 Cpe-Chr3:13138432 1.91E-15 wgd
Cpe14g00102 Cpe-Chr14:555543 Cpe09g00082 Cpe-Chr9:483132 8.93E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g716 . . . . . . . . . Cmo18g01279 . . . . . . Cpe14g00102 Bhi01g01293 . . . . . . Cla01g00450 . . . . . . . . . . Lsi05g01216 . Chy09g01031 Cme06g01014 . . . . . . . . . . . . Cma18g01253 Car16g00105 Car18g01163 Cpe09g00082 Cpe13g00095 . . . . . . . . . . . . . . . Csa03g01725 . Cme09g01573
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62818 PF07714 PK_Tyr_Ser-Thr 2.10E-10 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00102 Cpe_Chr14 FPKM 1.045861 0.565082 0.492861 0.340977 0.751794 0.938015 0.713869 0.0 0.0 0.0