Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00103 ATGCCATTTTATAGCGAGGAAGGCAAAGGAGAGGGAATAGTTATTGCACCTCATGTGGCTGGGCATTTATTGGGGGGAACCCTATGGAAGATAACTAAGGATGGAGAAGATGTTATATATGCTGTTGATTTTAACCACCGCAAGGAAAGGCATCTGAATGGAACCATTCTAGAGTCATTTGTGCGACCTGCTGTATTGATAACCGATGCTTATAATGCTCTAAATAATCAGCCTTACAGGCGTCAGAAGGACAAAGAATTTGGAGATACTATTCAGAAGACCTTAAGAGCTAATGGAAATGTCTTACTTCCTGTTGATACTGCTGGGCGAGTGTTGGAGCTTATTCAAATTTTAGAATGGGAAACAGGGGGTAGTTACCGGCATGTCACCCTTCTAATAAACAAAAGTGAACTTGATAATGCTCCAGATGGACCAAAGTTTGGAACTTTGGCCCGCATGCTTCAAGCAGATCCACCTCCCAAAGCTGTTAAGGTAACTGTGTCTAAGAGAGTCCCTTTGACCGGAGATGAGCTCGTTGCTTATGAAGAAGAGCAAAACAGGAAAAAGGAAGAAGCTCTTAAGGCTAGTTTGCTTAAGGAGGAACAATCTAAAGCATCACATGGAACTGATAACGATATTGGTGATCCAATGATCATTGATGCTAGCAGTAATGTAGCACCAGATGTAGTTGGTTCACATGGAGGTGCATACCGAGACATATTTATTGATGGTTTTGTTCCTCCTTCAACAAGCGTTTCTCCAATGTTTCCCTTTTATGAAAACACTTCCGCATGGGATGATTTTGGTGAAGTAATCAATCCTGATGATTATGTAATTAAGGATGAAGACATGGACCAATCAGCGCCGCATGGTGGTGTGGACGTGGATGGAAAACTAGATGAAACTGCTGCTAACTTGATTCTGGATATGAAGCCTTCAAAAGTTGTATCTAACGAATTGACAGTCTTGGTGCATGGAACTGCAGAGGCCACTGAGCATCTTAAGCAACATTGCCTTAAAAATGTACAACTTTCAGAGAAGCTGATGAGCAATGTGCTGTTTAAGAAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTTACCCTACGCAAGGTTTCAGATGCAAGTCAGAAGGGTGGTGGTTCTGATACTCAATCTGCTATTGGAGTAGGATTTTTCATGGCTTCCACTCCTCTTACGTGTTCACCGAGCTCTCTCCAGCTTAGGCTCGCTCTGAATAGCAAGAATTGCGGCAAATTCCCCTCAGTTCTTGTTCGGGCGAGAGTGACGAAATTGGATCCTTGGCTCCGCGTGATCTCCCGCCCTATTGTTCATAATGGCGTGATAATCGAGAGAGAAAATGGACTGCGTCGCAGTGGAGTTTGTTTTGCTGAGTCGGAGTCGACTACTGATGGATTCTCTGGGTGGTCGGAATCTGATTCCGGGGAGGAGGTTTTGGACTTACGGAGAAAGAAGTGGTTTGGAGGGTTCGTGGGGATTGGAGTTACTGGATTCATCCTTGTCTCAGGAATCACCTTTGCAGCATGGTCAATAAACAAGCAGAATGGTTCCAGACAAAAGCCGCAAATGGAGGCCTTAAGTATGCAGCAAGAATTATTGTTGGATTCTGATACTGGACATGATAGCCTTGATGAAGATGAAAAAGAAGATAGCAGTATGAATGCAGATGATGGAACTCTCGCTGGTTTTCCTGCTCCTATGGTGTCTGCAGCTGTTAAAACACTTCCTGGCAAGGTCCTAGTTCCTGCAGCAGTGGATCAGGTTCAGGGGCAGGCATTGGCAGCACTGCAAGGTTTAAAGGTGATAGAGGCTGACGTCGAACCTAGCGATCTATGTACTCGTCGTGAATATGCTCGTTGGTTGGTGTCTGCAAGCAGTGTTCTTTCAAGGAACACAACATTCAAAGTATACCAAGCAATGTATATACAGAATATTACTGAGCTTGCTTTTGATGATATTACACCAGAAGACCCTGATTTCGCATCTATTCAAGGTTTAGCAGAAGCTGGACTGATTTCAAGCAAGCTTTCGAGACATGATATTTCTTCGACGTTGGACGAAGACCAGGGGGAGGCTTCTGATATGGTAAGCGAGGAGCTTGCAAGGATTGAAGCTGAATCAATGGCGGAAAATGCTGTTGCTGCACATAGTGCGTTGGTAGCTCAAGTTGAGAAAGATATTAATGGCAGCTTCGAGAAAGAACTTTCCATTGAAAGAGAAAAGGTTGAGGCTGTGGAGAAAATGGCAGAAGAGACAAAGCAAGAATTGGAAAGATTAAGATCCGAAAGAGAGAGAGATAATATCAGCTTGATGAGGGAACAAGCTGCTATTGAATCGGAAATGGAAGTTCTTTCAAAGTTAAGATATGAGTTGGAGGAACAGTTGCAAGGCCTCATGAGTAACAAAGTAGAGGTTTCCCATGAAAAGGAAAGAATCAACAAACTCAGGAAAGAAGCTGAAATTGAAAACCAGGAAATTTCCCGCTTGCAGTATGAGCTTGAAGTTGAGAGGAAGGCGTTGTCCATAGCCAGAGCTTGGGCAGAGGATGAAGCAAAAAGAGCAAGAGAACAAGCAAAAGCACTTGAAGAGGCTAGAGATAGCTGGGAAAGGCGTGGCATCAAAGTAATGGTGGACAGCGATCTCCGTGAACAGGAATCAGCTGGCGATACTTGGCTCGATTCTAGCGAACAGTTTGCAGTCGAAGAAACTGTGGAAAGGGCCGAGAACTTATTGGCCAAGCTGAAAGGAATGGCTAGAGAAGTAGGAGGGAAATGCAGGGACATAATTGAGAAGATCATCCAGAAGATAGCATTAGTAGTATCAAACTTGAGACAATGGATTTCGAATGCTGGAGAACAGGGTGAAGATCTTAAGAATGTGGTCATTTCAAGGGCAAGTAGATCAGCAACTGAGGTGCAACAGAGCATTGCAGAGTTGAGGTTGGCCGTGAAGGCGATGGCTCCGAAGCAGCCGAATACTGGTCTCTTCGTGGGACTTAACAAAGGACACATTGTTACGAAGAAAGAGTTGGCTCCCCGCCCCTCAGATCGTAAAGGAAAAAGTAGCAAAAGAGTTCTCTTCGTGAGGAATTTGATCCGGGAAGTTGCTGGGTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGGAAGGACAAGAGAGCACTGAAAGTGGCCAAGAGAAAGTTGGGAACTCACAAGAGAGCAAAGAAGAAGCGAGAGGAGATGTCCAGCGTTCTCCGCAAAATGAGAGCTGGTGGAGGCGGCGAGAAGAAGAAATAA 3318 44.51 MPFYSEEGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWETGGSYRHVTLLINKSELDNAPDGPKFGTLARMLQADPPPKAVKVTVSKRVPLTGDELVAYEEEQNRKKEEALKASLLKEEQSKASHGTDNDIGDPMIIDASSNVAPDVVGSHGGAYRDIFIDGFVPPSTSVSPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQSAPHGGVDVDGKLDETAANLILDMKPSKVVSNELTVLVHGTAEATEHLKQHCLKNVQLSEKLMSNVLFKKVEFAGGALRCGEYVTLRKVSDASQKGGGSDTQSAIGVGFFMASTPLTCSPSSLQLRLALNSKNCGKFPSVLVRARVTKLDPWLRVISRPIVHNGVIIERENGLRRSGVCFAESESTTDGFSGWSESDSGEEVLDLRRKKWFGGFVGIGVTGFILVSGITFAAWSINKQNGSRQKPQMEALSMQQELLLDSDTGHDSLDEDEKEDSSMNADDGTLAGFPAPMVSAAVKTLPGKVLVPAAVDQVQGQALAALQGLKVIEADVEPSDLCTRREYARWLVSASSVLSRNTTFKVYQAMYIQNITELAFDDITPEDPDFASIQGLAEAGLISSKLSRHDISSTLDEDQGEASDMVSEELARIEAESMAENAVAAHSALVAQVEKDINGSFEKELSIEREKVEAVEKMAEETKQELERLRSERERDNISLMREQAAIESEMEVLSKLRYELEEQLQGLMSNKVEVSHEKERINKLRKEAEIENQEISRLQYELEVERKALSIARAWAEDEAKRAREQAKALEEARDSWERRGIKVMVDSDLREQESAGDTWLDSSEQFAVEETVERAENLLAKLKGMAREVGGKCRDIIEKIIQKIALVVSNLRQWISNAGEQGEDLKNVVISRASRSATEVQQSIAELRLAVKAMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 1105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 560647 576144 - Cp4.1LG14g06200.1 Cpe14g00103 480487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00103 1105 Coils Coil 910 930 - -
Cpe14g00103 1105 Pfam Metallo-beta-lactamase superfamily domain 8 66 IPR001279 -
Cpe14g00103 1105 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 397 561 - -
Cpe14g00103 1105 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 700 996 - -
Cpe14g00103 1105 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 560 699 - -
Cpe14g00103 1105 Coils Coil 745 783 - -
Cpe14g00103 1105 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 397 561 - -
Cpe14g00103 1105 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 700 996 - -
Cpe14g00103 1105 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 560 699 - -
Cpe14g00103 1105 Coils Coil 854 881 - -
Cpe14g00103 1105 Coils Coil 812 842 - -
Cpe14g00103 1105 SUPERFAMILY Metallo-hydrolase/oxidoreductase 8 342 IPR036866 -
Cpe14g00103 1105 ProSitePatterns Ribosomal protein L36e signature. 1050 1060 IPR000509 GO:0003735|GO:0005840|GO:0006412
Cpe14g00103 1105 MobiDBLite consensus disorder prediction 1074 1105 - -
Cpe14g00103 1105 Gene3D - 4 127 IPR036866 -
Cpe14g00103 1105 MobiDBLite consensus disorder prediction 1082 1105 - -
Cpe14g00103 1105 Gene3D 60S ribosomal protein L36 994 1100 IPR038097 -
Cpe14g00103 1105 Coils Coil 181 201 - -
Cpe14g00103 1105 MobiDBLite consensus disorder prediction 547 568 - -
Cpe14g00103 1105 Pfam Ribosomal protein L36e 1003 1096 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00103 K14402 CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2 - csv:101215442 703.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00084 Cpe14g00103 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01632 Cpe-Chr1:9981562 Cpe14g00103 Cpe-Chr14:560647 8.96E-11 dispersed
Cpe14g00103 Cpe-Chr14:560647 Cpe16g00177 Cpe-Chr16:3910921 6.09E-06 dispersed
Cpe01g01370 Cpe-Chr1:8239038 Cpe14g00103 Cpe-Chr14:560647 3.94E-11 transposed
Cpe09g00084 Cpe-Chr9:492145 Cpe14g00103 Cpe-Chr14:560647 9.93E-64 transposed
Cpe13g00256 Cpe-Chr13:2002436 Cpe14g00103 Cpe-Chr14:560647 2.70E-66 wgd
Cpe14g00103 Cpe-Chr14:560647 Cpe05g00649 Cpe-Chr5:3966564 2.98E-66 wgd
Cpe14g00103 Cpe-Chr14:560647 Cpe09g00083 Cpe-Chr9:489633 2.98E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g707 . . . . . . . Bma14g02074 . Cmo18g01276 . . . . . . Cpe14g00103 Bhi01g01302 Tan01g0237 . . . Mch10g0147 . . . . . . . . Cone1ag1163 Cone5ag0873 . . . . . Cme06g01012 . . . . . . . . . . . . . Car16g00107 Car18g01161 Cpe09g00084 . . . . . . . . Cla05g00890 . Cec05g0981 . . Cmu05g0921 . . Csa03g01723 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011726 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00103 Cpe_Chr14 FPKM 35.181461 37.209515 17.224207 14.860056 11.154328 9.274835 10.912183 12.141057 13.103927 12.69624