Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00107 ATGGAATTAAAAGTGAAGATGGTGAGCCAAAGGCAAAGACTTGCCCGGAAAAAGTACAGAGAAGAACACCCGGAACTGTTTCCGGAAGCAGAGCCAACGCCACCTAAAGACCCCGACAAGAAGAAGAAGAAGAAGAGTAAATTCAAGCGCAAAAAGGCAGAATCGAACTCAACCAGAGACCCAAATAAACCCCACAAGAAGGGTTTTAAGAAACACCCTCTTAGAGTGCCTGGGATGAAACCTGGAGAAAGCTGCTTCATCTGCAAAGCCAAAGACCACATTGCTAAGCTTTGCCCCGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGCCGGAGACGAGGGCACAGCCTCAAAAATTGCCCAGACAAAAATGAAAGGACTGTGGATAAGAAGTTATGCTATAACTGTGGTGAAACAGGACATTCATTGGCTAATTGTCCACAGCCTCTTCAAGATGGAGGAACTAAATTCGCCAGTTGTTTTATTTGTAACGAAAGTGGACACTTAAGCAAAAACTGTCCGAAGAACACTCATGGGATCTACCCTAAGGGAGGTTGTTGTAAAACTTGTGGGGAAGTCACACATTTAGCTAAGGATTGTCCAAACAAAGCCACCCAATTTTCTGGTGGGGCTTATGATGCATCTGGATATGTGGAAATGCGTAGACGACCAGAGACGAGGCGTGTGAGCGGGGATGATCTCGAGGATGATTTCAACATGGATGAAGATCATTTGCAGATGAAAGATGCAAAAGTGGAAAAGAAAAAGGGTCCCAAAGCGAACGCTGCATCTGGAATGGCTGTGAGTGATGAGTGTAAGCTCAAATTTTTGGAATTGAAAACGAAGAGGAACTATCGATTCATTGTGTTCAAGATTGAGAATCAAGAAGTTGTTGTGGATAAGCTCGGGAGTCCTCAAAAAACTTATGATGATTTCCTTGCTGCCATTCCTTCTAATGAGTGTCGCTATGCTGTCTTTGACTTTGATTTCACCACTGATGAGAACTGCCAGAAAAGCAAGATTTTCTTCATAGCTTGGTCCCCCGACACATCGATAGTGAGAAATAAGATGGTTTATGCGAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAACTGCAAGCCACTGATCCCAGCGAAATGAGCTTCGACATTATCAAAGCTCGAGCCTTTTAA 1197 43.94 MELKVKMVSQRQRLARKKYREEHPELFPEAEPTPPKDPDKKKKKKSKFKRKKAESNSTRDPNKPHKKGFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNERTVDKKLCYNCGETGHSLANCPQPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPNKATQFSGGAYDASGYVEMRRRPETRRVSGDDLEDDFNMDEDHLQMKDAKVEKKKGPKANAASGMAVSDECKLKFLELKTKRNYRFIVFKIENQEVVVDKLGSPQKTYDDFLAAIPSNECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSIVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 589167 594421 + Cp4.1LG14g06100.1 Cpe14g00107 480491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00107 398 Gene3D - 159 214 - -
Cpe14g00107 398 ProSiteProfiles ADF-H domain profile. 268 398 IPR002108 GO:0003779
Cpe14g00107 398 SUPERFAMILY Retrovirus zinc finger-like domains 130 180 IPR036875 GO:0003676|GO:0008270
Cpe14g00107 398 SMART adf_2 273 398 IPR002108 GO:0003779
Cpe14g00107 398 SUPERFAMILY Retrovirus zinc finger-like domains 78 126 IPR036875 GO:0003676|GO:0008270
Cpe14g00107 398 SUPERFAMILY Actin depolymerizing proteins 261 396 - -
Cpe14g00107 398 SMART c2hcfinal6 189 205 IPR001878 GO:0003676|GO:0008270
Cpe14g00107 398 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Cpe14g00107 398 SMART c2hcfinal6 109 125 IPR001878 GO:0003676|GO:0008270
Cpe14g00107 398 SMART c2hcfinal6 135 151 IPR001878 GO:0003676|GO:0008270
Cpe14g00107 398 SMART c2hcfinal6 84 100 IPR001878 GO:0003676|GO:0008270
Cpe14g00107 398 CDD ADF_cofilin_like 267 397 IPR017904 GO:0015629|GO:0030042
Cpe14g00107 398 Pfam Zinc knuckle 135 151 IPR001878 GO:0003676|GO:0008270
Cpe14g00107 398 Pfam Zinc knuckle 163 178 IPR001878 GO:0003676|GO:0008270
Cpe14g00107 398 Pfam Cofilin/tropomyosin-type actin-binding protein 275 395 IPR002108 GO:0003779
Cpe14g00107 398 ProSiteProfiles Zinc finger CCHC-type profile. 136 151 IPR001878 GO:0003676|GO:0008270
Cpe14g00107 398 PANTHER OS04G0555800 PROTEIN 7 262 - -
Cpe14g00107 398 Gene3D - 80 131 - -
Cpe14g00107 398 Gene3D Severin 258 397 IPR029006 -
Cpe14g00107 398 Pfam Zinc knuckle 108 124 IPR025836 -
Cpe14g00107 398 Pfam Zinc knuckle 189 204 IPR025836 -
Cpe14g00107 398 Gene3D - 132 158 - -
Cpe14g00107 398 ProSiteProfiles Zinc finger CCHC-type profile. 163 178 IPR001878 GO:0003676|GO:0008270
Cpe14g00107 398 ProSiteProfiles Zinc finger CCHC-type profile. 190 205 IPR001878 GO:0003676|GO:0008270
Cpe14g00107 398 MobiDBLite consensus disorder prediction 1 76 - -
Cpe14g00107 398 MobiDBLite consensus disorder prediction 1 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00107 - - - cpep:111810346 761.525
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00089 Cpe14g00107 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01357 Cpe-Chr4:11062035 Cpe14g00107 Cpe-Chr14:589167 8.77E-09 dispersed
Cpe08g00922 Cpe-Chr8:7249293 Cpe14g00107 Cpe-Chr14:589167 1.10E-06 dispersed
Cpe09g00090 Cpe-Chr9:526874 Cpe14g00107 Cpe-Chr14:589167 1.70E-89 dispersed
Cpe14g00107 Cpe-Chr14:589167 Cpe08g00556 Cpe-Chr8:3659857 9.76E-74 dispersed
Cpe13g00253 Cpe-Chr13:1968512 Cpe14g00107 Cpe-Chr14:589167 1.28E-78 wgd
Cpe14g00107 Cpe-Chr14:589167 Cpe03g01725 Cpe-Chr3:13078108 3.34E-76 wgd
Cpe14g00107 Cpe-Chr14:589167 Cpe05g00651 Cpe-Chr5:3972920 4.37E-80 wgd
Cpe14g00107 Cpe-Chr14:589167 Cpe09g00089 Cpe-Chr9:523419 2.47E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00107 Cpe_Chr14 FPKM 8.551903 9.1636 43.201691 45.121342 25.897955 27.142067 26.499886 6.596604 6.651411 5.418122