Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00191 ATGATAATATTTAATAATAATAATAATAATAATAAAAACAGCAAGAATATGAAAACAAGAGTCGCAGACAGGATCCGAAACCTAATCGAACCGATCGAGGGGCCACCGGAGACGGAGACGGAGATGGATCGCAATTTCAACTACGACGAGCATGACCACGAAGTTTATGGAGGCGATATCCCTGACGACGCCGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAAGATTACGAAGCCGAACCCAGTAGCGCCAACTCGAAGGACTTGGAGGACATGAAGAGGAGGCTTAAGGAGATCGAAGAGGAGGCCGGTGCCCTTCGGGAAATGCAGGCCAAGGTCGAGAAGGAGATGGGCGCTGTTCAAGATTCATCCAGTACCTCTGCAACGCAGGCTGAAAAGGAGGAAGCGGATTCTCGATCTGTATATGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCGTGTGGAACAGTTAATAGAGTGACAATTTTGACTGACAAATTTGGCCATCCCAAGGGATTTGCTTATGTCGAGTTCGTGGAGGTTGATGCTATCCAGAATGCTTTGCTGTTGAACGAGTCGGAGTTGCATGGTCGTCAACTAAAGGTCTCTGCTAAAAGGACAAATGTGCCTGGCATGAAGCAATTCCGAGGAAGGCGACCAAACTCTTTTGGCTTTCGAGGTCGTCGGCCTTTCATCCCTTCTGCACCTTTTCCTCCTTCGTATGAAGGGTTCCAAGGTTCAGGCGGCCGATGCGGTACAGACCCTACTAGGAGATACGATGATCGTACTATTACTGCAAACTATTGTTCGGGATCTACGAAG 861 48.2 MIIFNNNNNNNKNSKNMKTRVADRIRNLIEPIEGPPETETEMDRNFNYDEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYEAEPSSANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQFRGRRPNSFGFRGRRPFIPSAPFPPSYEGFQGSGGRCGTDPTRRYDDRTITANYCSGSTK 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1087416 1091312 - Cp4.1LG14g05150.1 Cpe14g00191 480575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00191 287 MobiDBLite consensus disorder prediction 48 96 - -
Cpe14g00191 287 Gene3D - 80 217 IPR012677 -
Cpe14g00191 287 SUPERFAMILY RNA-binding domain, RBD 133 243 IPR035979 GO:0003676
Cpe14g00191 287 Coils Coil 87 121 - -
Cpe14g00191 287 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 48 255 - -
Cpe14g00191 287 MobiDBLite consensus disorder prediction 69 96 - -
Cpe14g00191 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 214 IPR000504 GO:0003723
Cpe14g00191 287 MobiDBLite consensus disorder prediction 250 270 - -
Cpe14g00191 287 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 48 255 - -
Cpe14g00191 287 CDD RRM_II_PABPs 145 216 - -
Cpe14g00191 287 MobiDBLite consensus disorder prediction 120 143 - -
Cpe14g00191 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 220 IPR000504 GO:0003723
Cpe14g00191 287 SMART rrm1_1 145 216 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00191 K14396 PABPN1, PABP2; polyadenylate-binding protein 2 - csv:101222578 427.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00191 Cpe-Chr14:1087416 Cpe14g00597 Cpe-Chr14:3801800 4.05E-96 dispersed
Cpe08g00411 Cpe-Chr8:2639557 Cpe14g00191 Cpe-Chr14:1087416 5.15E-08 transposed
Cpe01g00330 Cpe-Chr1:1889901 Cpe14g00191 Cpe-Chr14:1087416 8.91E-163 wgd
Cpe01g00364 Cpe-Chr1:2095733 Cpe14g00191 Cpe-Chr14:1087416 8.46E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1018 . . . . . . . Bma12g00369 . . . . . . . . . . . . . . . . Cla10g00890 Cam10g0915 . Cco10g0911 Clacu10g0942 Cmu10g1729 Cre10g1101 . . . . . . . . . . . . . . . . . . Cmo16g00250 . . . . Cpe14g00191 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000374 6 8 4 4 4 3 7 3 3 4 3 3 6 4 4 6 3 6 5 3 4 3 4 3 4 2 4 8 5 1 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00191 Cpe_Chr14 FPKM 1.944595 3.063213 27.306166 27.595182 45.761909 44.543598 45.405796 18.497988 16.923191 17.288923