Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00230 ATGACGAGACAAAAAATTCAGATTAAAAAAATCGATAATATAGCAGCTAGGCAAGTGACGTTTTCAAAGAGGAGAAGAGGGCTGTTCAAGAAAGCTCATGAACTTGCTACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGGAAGCTCTTTGATTATTCTAGCTCAAGCATGCACGAGTTACTTGGAAGACATAATAAGCTACCAGAGGTGAATAACTTTTGCCAACCTCTATCTCAGATGGAAAAGAGTGTGTGTGCTAATTTGAGAGAGGAATTTGCAGCCAAAAACAAAGAACTTAGGCATATGAAGGGAGAAGAACTTGAAGAACTTGGAATAGAAGAATTAAAGCAGCTCGAGAAATTGCTCGAGATTGGTTTGAATCGTGTCTTAGAGACAAAGGAAGCTTTGCTGATGAAAGAGAATCAGAGACTGAGGAATCGAGTGAGAGCTTTGAATAGAGATGAGCAAGAACAGCAAGCAGTGGGTGTTGGTGGGAGCTCCTTGGGCTCAAAGTCAATCACTAGCAATAGCAGCTCCTCACCAAACCCTATCTTTGAAGGCTCAAAGTATGCGATTCTCTGCAGCAGCTTGGCAATGCAAGCTCAGCCTTCTCTAATGGAGCTTTTACTAATCACTGGACTGCCAAAGCCACTCCTATTTGCATACAGATAA 687 41.63 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMHELLGRHNKLPEVNNFCQPLSQMEKSVCANLREEFAAKNKELRHMKGEELEELGIEELKQLEKLLEIGLNRVLETKEALLMKENQRLRNRVRALNRDEQEQQAVGVGGSSLGSKSITSNSSSSPNPIFEGSKYAILCSSLAMQAQPSLMELLLITGLPKPLLFAYR 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1323554 1327231 + Cp4.1LG14g04960.1 Cpe14g00230 480614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00230 228 Coils Coil 132 166 - -
Cpe14g00230 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 159 - -
Cpe14g00230 228 MobiDBLite consensus disorder prediction 160 186 - -
Cpe14g00230 228 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Cpe14g00230 228 Gene3D - 15 105 IPR036879 GO:0003677|GO:0046983
Cpe14g00230 228 ProSiteProfiles K-box domain profile. 83 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe14g00230 228 MobiDBLite consensus disorder prediction 164 186 - -
Cpe14g00230 228 Pfam K-box region 90 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe14g00230 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe14g00230 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe14g00230 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe14g00230 228 Coils Coil 90 110 - -
Cpe14g00230 228 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 159 - -
Cpe14g00230 228 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Cpe14g00230 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe14g00230 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe14g00230 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe14g00230 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00370 Cpe14g00230 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00230 Cpe-Chr14:1323554 Cpe02g01021 Cpe-Chr2:9380290 1.33E-34 dispersed
Cpe19g00176 Cpe-Chr19:1423294 Cpe14g00230 Cpe-Chr14:1323554 6.37E-82 transposed
Cpe01g00370 Cpe-Chr1:2125778 Cpe14g00230 Cpe-Chr14:1323554 6.43E-32 wgd
Cpe10g00536 Cpe-Chr10:3143335 Cpe14g00230 Cpe-Chr14:1323554 4.19E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50488 PF01486 K-box 8.20E-11 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00230 - - csv:101223132 226.868