Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00247 ATGTTGAAGAAATTACCGGGTCGGAGCAGCAGGTCGAAAGGCATCAAAGTGAAGCATATTCTGCAGATTGTTCTGTTGGTTGGTGTTTGCTTTTGGTTAGTTTATCAGGTGAAGCGCTCCCATGACAAGAAGAAAGGATTCGACCAGAAAGATAATGAAATAACGATAAGAACTCGGGATGGAGGGGATGTTTTGAAATTTGGAAGGAAAGAGCTTCACCCACATGTTGAGGAAGTTCATCCCGACTCGAAGCAAGAGGACGATGAGGAGGAAGACTCAAAGCATGAGGTTGAAGAGGGACGTGAAGAACTGAAAAACGAGGCAGTCGATGAGGAGGAAGACTCGAAGCATGAGATAGAAGAGGGACGTGAAGAACTGAAAAACGAGTCAGTCGATGAGGAGGATGAAGGAAGCAAGCATGAGGTAGAAGAGGGACGTGAAAAACTGAAAAACGAGACAGTCGATGAGGAGGATGAAGGAAGCAAGCATGAGGTAGAAGAGGGACGTGAAGAACTGAAAAACGAGTCAGTCGATGAGGAGGATGAAGGAAGCAAGCATGAAGATGAAGAGGAGACCGATGATGATGGGAGAGGAGGTGGCGATGACGATATGAATGAGAATGATCGAGAGAAGTCCGATAATGAATCCGATCATGAAGGTGAGAATGCGGACGATGAGAGATTGAAAGAAGACGGTGATGAGGAGGCAGGAGGAGATGAGAATTCTTCTGATGAGCAGGAGAACGACAATGGTGATCCGATCACTCATGAGGCACGGGAGGAAAACTACAAGGGGGACGATGCATCTAGTGCCGTGGCCCATGACGACCACTCTACCACCTCGACAGACGACGTGAGTTTAGAAAGTTCAAGTGAGAATGCAGAGCTGAATAACAAAGAACAGAACAGTGAATCAAATGAAACCGAAGCGATTCGTTCACGGTTAACCGAGGAAGTAGATAAAACGGCTAACAATGAAACTTCAACGAACGAGAATTTCAGTGATGTGAAGCTCAGCGAAAACACGTCCTTCCCTACTGATGTTTCAGTTCAAGACTCAATCCCGACCGCTCAATCCAATGATCAACCTGAATCAAGCAATAATACATCCTCTGCAACTACTGATACAAGTAATGTAGAGAATGCAGATTCTTCTCAGCAGAAGGGAACAGAAATTGATTTGAATCATACTCAAAGTGAAATCATAGACAATTTGGCTGCTAAGAATGAAACATCTCTTCAGTCTATACTCACAGATATGAATGACAAGGTTTTGGAGAACAGCACTTCTGCATCTCAGCCAAATGAGGTTGAAGGCGAGACCCGAAACATCACGAGTAAGCCAGATCTTACTGTTTCAGACGACGAGACATCCAAAACGAAGAAAGACAACAGAACAAACGAACCGGAGAATGTCTTACCGACCATGATACCCAAGGAGAATAGTGAAGCTACTCATAACGACAAGTCGGAAGACGATGGCGAATCCAACGACGATAGCTCCAACTCGACAAACCACATTGAGGACCCAGTTCAAGACGATCGTCTTGATTCTAACGACTCCCATGTAACCGAACGGGTGGATCTAGATACGCTTCCAGACATCGAGATTGACAATAGTGAAGAGACTGCAGCAGAATGA 1641 45.16 MLKKLPGRSSRSKGIKVKHILQIVLLVGVCFWLVYQVKRSHDKKKGFDQKDNEITIRTRDGGDVLKFGRKELHPHVEEVHPDSKQEDDEEEDSKHEVEEGREELKNEAVDEEEDSKHEIEEGREELKNESVDEEDEGSKHEVEEGREKLKNETVDEEDEGSKHEVEEGREELKNESVDEEDEGSKHEDEEETDDDGRGGGDDDMNENDREKSDNESDHEGENADDERLKEDGDEEAGGDENSSDEQENDNGDPITHEAREENYKGDDASSAVAHDDHSTTSTDDVSLESSSENAELNNKEQNSESNETEAIRSRLTEEVDKTANNETSTNENFSDVKLSENTSFPTDVSVQDSIPTAQSNDQPESSNNTSSATTDTSNVENADSSQQKGTEIDLNHTQSEIIDNLAAKNETSLQSILTDMNDKVLENSTSASQPNEVEGETRNITSKPDLTVSDDETSKTKKDNRTNEPENVLPTMIPKENSEATHNDKSEDDGESNDDSSNSTNHIEDPVQDDRLDSNDSHVTERVDLDTLPDIEIDNSEETAAE 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1434932 1436572 + Cp4.1LG14g04810.1 Cpe14g00247 480631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00247 546 MobiDBLite consensus disorder prediction 322 395 - -
Cpe14g00247 546 PANTHER MYB-LIKE PROTEIN X 1 191 - -
Cpe14g00247 546 PANTHER MYB-LIKE PROTEIN X 148 546 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 249 282 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 424 451 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 305 321 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 508 533 - -
Cpe14g00247 546 Coils Coil 162 189 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 226 247 - -
Cpe14g00247 546 Coils Coil 298 318 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 119 172 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 202 225 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 452 468 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 424 546 - -
Cpe14g00247 546 Coils Coil 87 159 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 283 304 - -
Cpe14g00247 546 PANTHER MYB-LIKE PROTEIN X 148 546 - -
Cpe14g00247 546 PANTHER MYB-LIKE PROTEIN X 1 191 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 173 201 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 69 90 - -
Cpe14g00247 546 MobiDBLite consensus disorder prediction 69 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00247 - - - cpep:111810437 984.556
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00381 Cpe14g00247 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00381 Cpe-Chr1:2201972 Cpe14g00247 Cpe-Chr14:1434932 1.18E-168 wgd
Cpe10g00511 Cpe-Chr10:3006200 Cpe14g00247 Cpe-Chr14:1434932 1.26E-21 wgd
Cpe14g00247 Cpe-Chr14:1434932 Cpe19g00704 Cpe-Chr19:5526508 6.93E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g787 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1052 Cone10ag1070 . . . . . . . . . . . . Sed07g1153 . Cmo16g00317 . . . . Cpe14g00247 Cpe01g00381 Bhi11g01093 Tan01g0597 Cmetu07g1866 . Hepe07g0387 Mch10g0400 . . . . . . . . . . . Cme07g02218
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001422 2 2 3 1 1 2 4 2 2 3 2 2 4 1 0 3 2 4 4 2 1 2 2 2 2 2 2 5 3 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00247 Cpe_Chr14 FPKM 0.46468 0.829173 0.088746 0.150316 0.318803 0.0 0.313011 0.24699 0.356306 0.271268