Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00249 ATGTCCCGTTCTCTCCTCCGAGCTTTTCCTTTCTCCACTCTTCGCCCCAAGCCTCCTCAATTTCTCCCCATCTTCCACCACATTTCCCATCTCCGCCTTGTCAAATCCATTTCCAGAACTCGGAGATCGGTTTCCTCATTGTCAGCTTCCGCCGCCGAAACGCTCGTTCCCAGTTCGAATTCTCAGTTGCCTCTTAAAGACTCTCTTCAGTGGATCAATCGTACTGCGCTCTGCGGTGAATTGTCGGTTGACGATGTTGGGAAACGGGTTCGGCTGTGTGGTTGGGTCGCCCTGCATAGGGTTCACGGTGGTCTAACGTTTCTCAATCTTCGAGACCACAGTGGTATTGTTCAGGTGACTACGCTCCCCAACGAGTTTCCAGATGCTCATTCGACTATTAATGACTTGCGGCTTGAGTATGTTGTTGCTGTAGAAGGCACTGTACGGTCTCGGCCTGGCGATTCAGTTAATGTAAATATGAAAACAGGCTTGATAGAGGTTGCTGCAGAGCATGTTCAAATATTAAATTCTGTTGGATCAAAGTTGCCCTTTTTAGTTACAACTGCTGATGATGCAAAGGATTATGCTAAAGAGGAAATTCGACTGAGGTACCGGTACCTTGATCTACGAAGGAAGCAAATGAATTTTAACATAATGCTCCGGCATAAAGTGGTGAAGCTCATGCGTAGATATTTAGAGGATGTACATGGTTTTGTGGAGATTGAGACGCCAATCCTTTCTAGATCTACTCCAGAAGGTGCTCGGGATTATCTAGTGCCGTCTAGAGTTCAGCCAGGAACATTTTTTGCTTTGCCTCAAAGTCCACAGCTGTTTAAGCAAATGTTGATGGTGTCTGGTTTTGATAAATACTATCAAATAGCAAGGTGTTTCCGAGATGAAGACCTAAGAGCTGACCGACAACCTGAGTTTACACAACTTGATATGGAATTAGCATTTACAACTTTGGAAGACATGCTGAAACTCAACGAAGATTTGATTAGAAAGGTTTTTTGGGAAGTAAAAGGTGTTCAGCTGCCAAATCCTTTCCCGAAGCTTACCTATTCTGAAGCGATGAGTCGATATGGATCAGATAGGCCAGATACAAGATTTGATCTTCAATTGAAAGATGTGTCTGATGTTTTTGCAGATTCTTCATTTAAGGTTTTTGCAGACGCCTTGTCTAATGGCGAAATCATCAAAGTCCTGTGTGTGCCCTCCGGTGCTAAAAGGTATTCAAACACAGCTCTTAAAAAGGGTGACATTTATTCGGAGGCGATCAAATCTGGTGCCAAAGGATTACCTTTTTTGAAAATTTTAGACGATGGAGGCATTGAAGGGATTCCTTCCCTAGTATCAAGTTTGGATCCTGCAGGTAGAGAGGAGTTTCTAAGTAGATGCTCTGCTGGACCTGGTGATCTAGTCTTGTTTGCCGTGGGCCATCAAGTATCGGTTAATAAAACTCTCGATAGGCTTAGACTATATGTAGCTAATGAGCTGGGCTTGGTCGACCATTCTAGGCATTCAATTTTGTGGGTTACTGATTTCCCAATGTTTGAATGGAACGATCTCGAGCAACGACTTGAGGCTTTGCACCACCCTTTTACAGCTCCAAACCCTGAAGACATCGATGATTTACCCTCAGCTCGTGCCTTAGCATATGATATGGTTTACAATGGAGTAGAGATTGGTGGAGGGAGTTTGAGAATTCACAAACGTGAAGTTCAAGAGAAGGTTCTGGAGATTGTGGGAATCTCTCATGAACAGGCAGAAGCGAAGTTCGGTTATTTATTGGAGGCACTAGACATGGGTGCACCCCCTCATGGGGGCATTGCTTATGGGTTGGACAGATTAGTCATGTTATTGGCAGAGGCAAATTCCATTAGGGATGTCATAGCTTTCCCAAAGACAACAACAGCACAATGTGCCCTCACAAAAGCTCCTTCAGAAGTCGAACCCCAGCAACTCAAGGATTTATCATATCAGAACCAATAA 1992 44.23 MSRSLLRAFPFSTLRPKPPQFLPIFHHISHLRLVKSISRTRRSVSSLSASAAETLVPSSNSQLPLKDSLQWINRTALCGELSVDDVGKRVRLCGWVALHRVHGGLTFLNLRDHSGIVQVTTLPNEFPDAHSTINDLRLEYVVAVEGTVRSRPGDSVNVNMKTGLIEVAAEHVQILNSVGSKLPFLVTTADDAKDYAKEEIRLRYRYLDLRRKQMNFNIMLRHKVVKLMRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTLEDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDVFADSSFKVFADALSNGEIIKVLCVPSGAKRYSNTALKKGDIYSEAIKSGAKGLPFLKILDDGGIEGIPSLVSSLDPAGREEFLSRCSAGPGDLVLFAVGHQVSVNKTLDRLRLYVANELGLVDHSRHSILWVTDFPMFEWNDLEQRLEALHHPFTAPNPEDIDDLPSARALAYDMVYNGVEIGGGSLRIHKREVQEKVLEIVGISHEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAEANSIRDVIAFPKTTTAQCALTKAPSEVEPQQLKDLSYQNQ 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1441289 1448852 - Cp4.1LG14g04700.1 Cpe14g00249 480633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00249 663 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 73 663 IPR004524 GO:0005524|GO:0016874
Cpe14g00249 663 SUPERFAMILY Class II aaRS and biotin synthetases 198 636 IPR045864 -
Cpe14g00249 663 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 53 660 - -
Cpe14g00249 663 TIGRFAM aspS_bact: aspartate--tRNA ligase 73 661 IPR004524 GO:0005524|GO:0016874
Cpe14g00249 663 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 220 634 IPR006195 -
Cpe14g00249 663 Gene3D - 353 502 IPR004115 GO:0004812|GO:0005524|GO:0005737
Cpe14g00249 663 SUPERFAMILY Nucleic acid-binding proteins 74 176 IPR012340 -
Cpe14g00249 663 Pfam GAD domain 389 488 IPR029351 -
Cpe14g00249 663 Gene3D Bira Bifunctional Protein; Domain 2 193 658 IPR045864 -
Cpe14g00249 663 Pfam tRNA synthetases class II (D, K and N) 198 637 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe14g00249 663 SUPERFAMILY GAD domain-like 370 502 IPR004115 GO:0004812|GO:0005524|GO:0005737
Cpe14g00249 663 Pfam OB-fold nucleic acid binding domain 90 173 IPR004365 GO:0003676
Cpe14g00249 663 PRINTS Aspartyl-tRNA synthetase signature 271 283 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe14g00249 663 PRINTS Aspartyl-tRNA synthetase signature 288 301 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe14g00249 663 PRINTS Aspartyl-tRNA synthetase signature 553 569 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe14g00249 663 PRINTS Aspartyl-tRNA synthetase signature 597 611 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe14g00249 663 CDD EcAspRS_like_N 74 214 - -
Cpe14g00249 663 CDD AspRS_core 218 637 - -
Cpe14g00249 663 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 53 660 IPR004524 GO:0005524|GO:0016874
Cpe14g00249 663 Gene3D - 66 178 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00249 K01876 DARS2, aspS; aspartyl-tRNA synthetase [EC:6.1.1.12] - csv:101202872 1204.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00384 Cpe14g00249 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00384 Cpe-Chr1:2211397 Cpe14g00249 Cpe-Chr14:1441289 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g777 . Blo03g00057 Bda06g01152 . Bpe07g00295 . . Bma12g00306 . . . . . . . . . . . . . . . . Cla10g00957 Cam10g0980 Cec10g1011 Cco10g0974 Clacu10g1002 Cmu10g1784 Cre10g1158 . . Cone3ag1050 Cone10ag1066 . . . . . . . . . . . . Sed07g1150 Cmo04g00458 Cmo16g00319 . . . . Cpe14g00249 Cpe01g00384 Bhi11g01096 Tan01g0600 Cmetu07g2217 . . Mch10g0404 . . . . . . . . Lsi03g01002 . . Cme07g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009118 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00249 Cpe_Chr14 FPKM 14.062776 16.126041 2.771065 2.270158 0.969118 1.634145 1.726428 0.0 0.0 0.0