Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00260 ATGGGTGCTCCGAAGCAGAAATGGACTAACGAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTGATGGCTAATGGTTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACATTTTGGCTCGAAGTGTTGCTGTCCAAAGTGAAGACGAATTGCCAGAAGCTAAATCTGTTTCTCTTTCCTCGGATATCAAGCTGATAGCTGGTCCAAAGCGATCTAATGTAAGAAAAGAAGAAGAGGAGGAAGAAGAAGAAGATGATGATGAAGAAGAAGAAACGGAAGCAGAAAGAACAGAAAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTCATAATTGAGGCAATTACTACCTTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCACCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCAGTGATGCCTTCGTCAGAGAGAAGGAGCTCTATGTTATTCTTGGACGACCATCAAAGAGCTTCTTTAAGAACTGACAAGGACGAAATGATACCTCCCGACAAGAACTAA 765 42.09 MGAPKQKWTNEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENILARSVAVQSEDELPEAKSVSLSSDIKLIAGPKRSNVRKEEEEEEEEDDDEEEETEAERTERDARYDCHRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASGKLVKVKRKYRLPPVMPSSERRSSMLFLDDHQRASLRTDKDEMIPPDKN 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1500414 1507626 + Cp4.1LG14g04610.1 Cpe14g00260 480644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00260 254 SMART h15plus2 148 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe14g00260 254 Gene3D - 151 227 IPR036388 -
Cpe14g00260 254 Pfam linker histone H1 and H5 family 156 212 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe14g00260 254 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cpe14g00260 254 Gene3D - 2 59 - -
Cpe14g00260 254 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cpe14g00260 254 SMART sant 4 59 IPR001005 -
Cpe14g00260 254 MobiDBLite consensus disorder prediction 229 254 - -
Cpe14g00260 254 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 151 219 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe14g00260 254 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Cpe14g00260 254 MobiDBLite consensus disorder prediction 220 254 - -
Cpe14g00260 254 Coils Coil 118 147 - -
Cpe14g00260 254 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 248 - -
Cpe14g00260 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cpe14g00260 254 MobiDBLite consensus disorder prediction 117 148 - -
Cpe14g00260 254 MobiDBLite consensus disorder prediction 125 141 - -
Cpe14g00260 254 CDD SANT_TRF 6 56 - -
Cpe14g00260 254 SUPERFAMILY Winged helix DNA-binding domain 151 226 IPR036390 -
Cpe14g00260 254 PANTHER SINGLE MYB HISTONE 4 1 248 IPR044597 GO:0003691
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00260 K09422 MYBP; transcription factor MYB, plant - csv:101218411 384.415
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00396 Cpe14g00260 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01057 Cpe-Chr3:8747520 Cpe14g00260 Cpe-Chr14:1500414 3.36E-33 dispersed
Cpe14g00260 Cpe-Chr14:1500414 Cpe16g00687 Cpe-Chr16:7120361 6.33E-06 dispersed
Cpe15g00054 Cpe-Chr15:371009 Cpe14g00260 Cpe-Chr14:1500414 2.36E-10 dispersed
Cpe01g00396 Cpe-Chr1:2296937 Cpe14g00260 Cpe-Chr14:1500414 1.21E-121 wgd
Cpe10g00484 Cpe-Chr10:2853798 Cpe14g00260 Cpe-Chr14:1500414 9.00E-69 wgd
Cpe14g00260 Cpe-Chr14:1500414 Cpe19g00677 Cpe-Chr19:5373858 1.04E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g00260 CST 1 248 Single Myb Histone (SMH) Gene Family AT1G49950 57.6 8.6e-67 251.1
Cpe10g00484 . 20 266 Single Myb Histone (SMH) Gene Family AT1G49950 53.5 4.4e-63 238.8
Cpe01g00396 CST 1 232 Single Myb Histone (SMH) Gene Family AT1G49950 55.6 1.3e-59 227.3
Cpe10g00484 . 20 266 Single Myb Histone (SMH) Gene Family AT5G67580 54.0 2.5e-66 249.6
Cpe10g00484 . 20 266 Single Myb Histone (SMH) Gene Family AT3G49850 50.2 6.1e-57 218.4
Cpe03g01057 . 1 269 Single Myb Histone (SMH) Gene Family AT1G17520 51.7 1.7e-67 253.4
Cpe02g01732 . 1 272 Single Myb Histone (SMH) Gene Family AT1G17520 51.4 2.2e-67 253.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50489 PF00538 Linker_histone 1.00E-08 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00260 Cpe_Chr14 FPKM 11.049687 14.676902 2.023258 1.685161 2.13341 2.815242 2.174865 2.646318 2.299706 2.338487