Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00260 ATGGGTGCTCCGAAGCAGAAATGGACTAACGAAGAAGAAGCAGCCCTGAAGGCTGGAGTTGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTGATGGCTAATGGTTGGGGATCCCGAGAGAAGGCCAGGTTGGCTCTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACATTTTGGCTCGAAGTGTTGCTGTCCAAAGTGAAGACGAATTGCCAGAAGCTAAATCTGTTTCTCTTTCCTCGGATATCAAGCTGATAGCTGGTCCAAAGCGATCTAATGTAAGAAAAGAAGAAGAGGAGGAAGAAGAAGAAGATGATGATGAAGAAGAAGAAACGGAAGCAGAAAGAACAGAAAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTCATAATTGAGGCAATTACTACCTTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCACCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCTTAACAGCTAGTGGTAAACTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCAGTGATGCCTTCGTCAGAGAGAAGGAGCTCTATGTTATTCTTGGACGACCATCAAAGAGCTTCTTTAAGAACTGACAAGGACGAAATGATACCTCCCGACAAGAACTAA 765 42.09 MGAPKQKWTNEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENILARSVAVQSEDELPEAKSVSLSSDIKLIAGPKRSNVRKEEEEEEEEDDDEEEETEAERTERDARYDCHRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASGKLVKVKRKYRLPPVMPSSERRSSMLFLDDHQRASLRTDKDEMIPPDKN 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1500414 1507626 + Cp4.1LG14g04610.1 Cpe14g00260 480644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00260 254 SMART h15plus2 148 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe14g00260 254 Gene3D - 151 227 IPR036388 -
Cpe14g00260 254 Pfam linker histone H1 and H5 family 156 212 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe14g00260 254 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cpe14g00260 254 Gene3D - 2 59 - -
Cpe14g00260 254 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cpe14g00260 254 SMART sant 4 59 IPR001005 -
Cpe14g00260 254 MobiDBLite consensus disorder prediction 229 254 - -
Cpe14g00260 254 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 151 219 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cpe14g00260 254 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Cpe14g00260 254 MobiDBLite consensus disorder prediction 220 254 - -
Cpe14g00260 254 Coils Coil 118 147 - -
Cpe14g00260 254 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 248 - -
Cpe14g00260 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cpe14g00260 254 MobiDBLite consensus disorder prediction 117 148 - -
Cpe14g00260 254 MobiDBLite consensus disorder prediction 125 141 - -
Cpe14g00260 254 CDD SANT_TRF 6 56 - -
Cpe14g00260 254 SUPERFAMILY Winged helix DNA-binding domain 151 226 IPR036390 -
Cpe14g00260 254 PANTHER SINGLE MYB HISTONE 4 1 248 IPR044597 GO:0003691
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00396 Cpe14g00260 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01057 Cpe-Chr3:8747520 Cpe14g00260 Cpe-Chr14:1500414 3.36E-33 dispersed
Cpe14g00260 Cpe-Chr14:1500414 Cpe16g00687 Cpe-Chr16:7120361 6.33E-06 dispersed
Cpe15g00054 Cpe-Chr15:371009 Cpe14g00260 Cpe-Chr14:1500414 2.36E-10 dispersed
Cpe01g00396 Cpe-Chr1:2296937 Cpe14g00260 Cpe-Chr14:1500414 1.21E-121 wgd
Cpe10g00484 Cpe-Chr10:2853798 Cpe14g00260 Cpe-Chr14:1500414 9.00E-69 wgd
Cpe14g00260 Cpe-Chr14:1500414 Cpe19g00677 Cpe-Chr19:5373858 1.04E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50489 PF00538 Linker_histone 1.00E-08 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00260 K09422 - csv:101218411 384.415