Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00261 ATGGTTGCGATTGGGGGAATTTCGTTGCCGCGTTTCATAGCGCCGTCGCTTCACCGCCAGTCCTTTTCGCCGCCGGCGATTGGGTTTGCGAGGTTTCCCAATAGGATTAGGCTTAGATCGACAGTGGCTTTGCTGGATGAGGTTGAGAAGACGGGTTCGAGGGCGGCGATTGTCAATCGGAAGGTCGATGGTTTGGTTAAGAGTGATTGTGAGACTGATTTCGATGCTACCTTGGGCAATGGACATGCTAGGAACTCTGGCAAAAATCTTGGCGTGTTGTCCACCGTTGGAAATTCTACTAACATCAAATGGCATGAATGTTCTGTTGGAAAGATTGAAAGACAGAGCCTACTAGAACAGAAAGGATGTGTCATATGGATCACTGGTCTTAGTGGCTCAGGGAAGAGCTGTGTGGCCTGTGCCTTGAATCAAATCTTATACAAAATGGGGAAGTTGGCTTATATCCTTGATGGGGATAATGTCAGGCATGGCTTGAACCGCGACCTTGGTTTTAAAGCGGAAGATCGTGCCGAGAACATAAGGAGGATCGGTGAGGTTGCGAAACTGTTTGCCAATGCCGGAGTTATTTGCATTGCTAGTTTGATATCTCCATATCGAAGGGATCGAGATGCTTGTCGTGCCATTTTGCCTGATGGATATTTTATTGAGGTGTTCATGGATGTTTCTCTTGAAGTTTGTGAAGCAAGAGATGCAAAAGGACTGTATAAGCTTGCACGGGCGGGGAAGATCAAAGGCTTTACCGGTATTGATGATCCGTATGAAGTACCATTGAACTGTGAGATAGTACTGAAGAACAATGGAGGCTCCCCATGTGAGATGGCAGAGAAAGTAATGAGTTACCTTGAGCAGAAGGGCTTCCTGCAGGCTTAA 891 46.91 MVAIGGISLPRFIAPSLHRQSFSPPAIGFARFPNRIRLRSTVALLDEVEKTGSRAAIVNRKVDGLVKSDCETDFDATLGNGHARNSGKNLGVLSTVGNSTNIKWHECSVGKIERQSLLEQKGCVIWITGLSGSGKSCVACALNQILYKMGKLAYILDGDNVRHGLNRDLGFKAEDRAENIRRIGEVAKLFANAGVICIASLISPYRRDRDACRAILPDGYFIEVFMDVSLEVCEARDAKGLYKLARAGKIKGFTGIDDPYEVPLNCEIVLKNNGGSPCEMAEKVMSYLEQKGFLQA 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1526369 1529842 - Cp4.1LG14g04520.1 Cpe14g00261 480645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00261 296 PANTHER ADENYLYL-SULFATE KINASE 1, CHLOROPLASTIC 51 296 - -
Cpe14g00261 296 Hamap Adenylyl-sulfate kinase [cysC]. 120 292 IPR002891 GO:0000103|GO:0004020|GO:0005524
Cpe14g00261 296 CDD APSK 124 271 IPR002891 GO:0000103|GO:0004020|GO:0005524
Cpe14g00261 296 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 51 296 - -
Cpe14g00261 296 Pfam Adenylylsulphate kinase 121 273 - -
Cpe14g00261 296 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 291 IPR027417 -
Cpe14g00261 296 TIGRFAM apsK: adenylyl-sulfate kinase 104 287 IPR002891 GO:0000103|GO:0004020|GO:0005524
Cpe14g00261 296 Gene3D - 94 296 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00261 K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25] - csv:101213954 498.049
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00401 Cpe14g00261 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00921 Cpe-Chr3:6084987 Cpe14g00261 Cpe-Chr14:1526369 2.22E-76 transposed
Cpe01g00401 Cpe-Chr1:2322859 Cpe14g00261 Cpe-Chr14:1526369 6.21E-159 wgd
Cpe14g00261 Cpe-Chr14:1526369 Cpe19g00672 Cpe-Chr19:5357749 7.54E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g709 Blo02g00927 Blo03g00071 Bda06g01200 . Bpe07g00277 . Bma05g00649 Bma12g00284 . . . . . . . . . . . . . . . . Cla10g00977 Cam10g1000 Cec10g1030 Cco10g0993 Clacu10g1021 Cmu10g1804 Cre10g1178 . . Cone3ag1029 Cone10ag1045 . . . . . . . . . Bpe05g00469 . . Sed07g1259 Cmo04g00480 Cmo16g00334 . . . . Cpe14g00261 Cpe01g00401 Bhi11g01131 Tan01g0626 Cmetu07g0597 . Hepe07g0409 Mch10g0422 . . . . . . . . Lsi03g01016 . . Cme07g02193
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000484 3 6 4 4 2 2 4 3 2 1 2 2 2 3 3 4 2 4 4 2 3 2 3 3 3 2 3 19 14 3 114
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00261 Cpe_Chr14 FPKM 3.66664 5.21317 10.902138 13.494489 15.340321 10.418859 13.788185 5.914916 7.375257 5.357466