Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00278 ATGGAAGAAAGAGATGAATATACAGAATCGAGAAGTAATAATAATGCTGAAGCCGTACAAGAAGCCAAGATCAGTGTTGAAGCTGAAATGCCAACTTGTCTTTCAAATGAGCAAAAGCATTCAGTTCCTGATTATCATGAATTGGAAGCAACTCCAGAATATACCAACAAAACTGGCGGTCCAGATGAAGAAAAGCCAGAGGTCCAGCAGAATATGGAGGAAGAGAATAAGGAACTTGGTTCAGGAGACGTGCTTAGTGAATTATCAGAAAAACACAATCGGACTTTCTCTAACCTTGCTGATAATGATCAAGTTGAAGCTGGTAATTTATTATGCTGTGATAAAGATACCGAAAATTTGATAGTACCTATTGAAGTTGAGACAACGACTCTTCTTGTTGACTGCTCTGAACTTCCACCTGAAGTTGTCAACAAAAACTATATTGAACAGATGAACCCTCCTATTGAAGAATTAACCCAAAATACTCCTTTTCAAAATTTAGAAACAGTCCCCAGTAATTCAGAACAATCGGATCACAAGGATAAGAGAATTTTGAAATCAATGAAGATAAAGTCTATTTTAAGGTCCCTTGTAAGTAGTGACAGAAATATGCGTTCAAAGACCCAAGAGAAAGATAAAGATCCTGAACCAAGTAATGACTTGAATAATTTTACTGCTGAAGAGGGAAAAGGGAAGAAGAAGGAGAGAAATATACAAGGAAAGGGAGCAAGAGTCGATGAATTCTCATCAATCAGGAATCATTTGAGATATTTACTGAACCGCATCAAATATGAACAGAACTTGATTGAAGCTTATTCTAGTGAAGGCTGGAAAGGGTTCAGCTCAGATAAATTGAAGCCTGAAAAGGAACTTCAACGGGCATCAAATGAAATAATGCGACGCAAATTAAAAATAAGAGATGTATTTCAACGTATTGATGCACTTTGTGGCGAAGGAGGCCTTTCTAAATCTTTATTCGATTCTCAAGGACAGATAGACAGTGAAGATATATTCTGTGCAAAATGTGGATCCAAAGAATTGTCCCTTGAGAATGACATCATACTATGTGATGGTATTTGTGATCGTGGGTTCCATCAGTTCTGTTTAGAACCACCTTTGCTAAATACAGACATTCCGCCGGATGATGAAGGATGGCTATGCCCCGGATGTGATTGCAAAGATGACTGCTTGAATCTGCTTAATGAATTTCAAGGATCAAGACTTTCCATCACTGATGGTTGGGAGAAAGTCTATCCCGAGGCCGCAGCATCAGCTGCTGGACGAAATTTTGATCATGCCTTAGGTCTTCCTTCAGATGATTCTGAAGATGATGATTATGATCCTGATGTTCCAGATACTATTGTCCAGGACGATGAATCAAGTTCTGAAACATCTGGGTATGCTTCTGCTTCTGAGGAATTAGAGTCTCCATCCAATGTTGACCAGTACTTAGGTCTCCCTTCCGATGACTCGGACGATGATGACTATGATCCCAGTGCTCCAGAACGTGATGAAGATGTTAGACAGGAAAGTTCTAGTTCTGACTTTACATCTGATTCTGAGGATTTAGCTGCACTTGACAGTAGCCCCTCTTCCAAAGCTGATAACCTTGTGTCTTCATCACTGAATAATACTACGTCTACGAAAAACCCTGATGGGCGAAGTTCTGGAGGTGGTCCTAGAAAGAGTGCACTGTATAATGAGCTATCAAGTCTACTAGAGTCCGATCCTGAACCTGTTTTGGGAAGAAGACAGGTGGAACGGTTGGATTACAAGAAGCTCCATGATGAGACATACGGGAATGTTCCTACCGACTCAAGCGATGACACGTACGCGAGTATTTCTACGGATTCAAGTGATGACCAAGGCTGGGATAGTAATACAAGGAAGAGAAGTCCTAAAACCCTGGTTCTTGCACTGCCAAATTATCGAACTAATGATGATATGACTAACGTAAAAACTAAACACAGTTCTAAGAGGGGTACTCGTCAAAAGGCAGCTGCTGTAAATATGAATAAATCTGTGACTAAAACTCCTGAAGACACTGGAAAAGCTAGTTCTTCTGTTAGGAGAACCACACCATCATCGTATAGAAGACTCAGTCAACTTGCATTGGAGAGACTTTTAGCATCATTCCAAGAAAACCAGTATCCTGAACGAGCTACAAAGGAAAGTCTGGCACAAGAACTAGGGCTCAGTGTGAAGCAGGTTAGCAAATGGTTTACGAACACACGTTGGAGCACACGCCATCCCTCAAGCGTTGAGGGTAATAAAGCGAAGAGTTCCTCAAGAATGGGCATTCGTTCATCTCAGGCAAGTGGAGAGCTGCACCAGCCCGAGCAAGAATTTGGTGCCCAACATCAAGAATTACCAACGACAGATAGTGTTGTGGCCCCATGTCAGAGTGGGGATACAGGGGATGTCAAATTGGCAACTCAGGAAACTAAAAGATCAGAATTTTCTGCCGCAAAATCCAGAAAACGGAAGGGCAGGTCAGATCACGCTGCATCATGTTCAAAGGACAGTAAGGAATCACAAAGGCCTCCTGCCAAGTCTCCAAAAGTAAATGAAATCCAAACAGCACATAGCATTAAGACGAGGAGGAGAAATTCCTTATAG 2619 41.28 MEERDEYTESRSNNNAEAVQEAKISVEAEMPTCLSNEQKHSVPDYHELEATPEYTNKTGGPDEEKPEVQQNMEEENKELGSGDVLSELSEKHNRTFSNLADNDQVEAGNLLCCDKDTENLIVPIEVETTTLLVDCSELPPEVVNKNYIEQMNPPIEELTQNTPFQNLETVPSNSEQSDHKDKRILKSMKIKSILRSLVSSDRNMRSKTQEKDKDPEPSNDLNNFTAEEGKGKKKERNIQGKGARVDEFSSIRNHLRYLLNRIKYEQNLIEAYSSEGWKGFSSDKLKPEKELQRASNEIMRRKLKIRDVFQRIDALCGEGGLSKSLFDSQGQIDSEDIFCAKCGSKELSLENDIILCDGICDRGFHQFCLEPPLLNTDIPPDDEGWLCPGCDCKDDCLNLLNEFQGSRLSITDGWEKVYPEAAASAAGRNFDHALGLPSDDSEDDDYDPDVPDTIVQDDESSSETSGYASASEELESPSNVDQYLGLPSDDSDDDDYDPSAPERDEDVRQESSSSDFTSDSEDLAALDSSPSSKADNLVSSSLNNTTSTKNPDGRSSGGGPRKSALYNELSSLLESDPEPVLGRRQVERLDYKKLHDETYGNVPTDSSDDTYASISTDSSDDQGWDSNTRKRSPKTLVLALPNYRTNDDMTNVKTKHSSKRGTRQKAAAVNMNKSVTKTPEDTGKASSSVRRTTPSSYRRLSQLALERLLASFQENQYPERATKESLAQELGLSVKQVSKWFTNTRWSTRHPSSVEGNKAKSSSRMGIRSSQASGELHQPEQEFGAQHQELPTTDSVVAPCQSGDTGDVKLATQETKRSEFSAAKSRKRKGRSDHAASCSKDSKESQRPPAKSPKVNEIQTAHSIKTRRRNSL 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1612991 1624485 + Cp4.1LG14g04420.1 Cpe14g00278 480662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00278 872 Pfam Homeodomain 697 746 IPR001356 GO:0003677
Cpe14g00278 872 MobiDBLite consensus disorder prediction 663 696 - -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 580 599 - -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 747 777 - -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 646 696 - -
Cpe14g00278 872 ProSiteProfiles Zinc finger PHD-type profile. 336 393 IPR019787 -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 785 800 - -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 513 554 - -
Cpe14g00278 872 SUPERFAMILY Homeodomain-like 687 751 IPR009057 -
Cpe14g00278 872 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 103 816 - -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 438 456 - -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 1 81 - -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 432 633 - -
Cpe14g00278 872 ProSiteProfiles 'Homeobox' domain profile. 691 751 IPR001356 GO:0003677
Cpe14g00278 872 PANTHER HOMEOBOX PROTEIN HAT3.1 103 816 - -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 58 81 - -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 226 242 - -
Cpe14g00278 872 CDD PHD_PRHA_like 338 390 IPR045876 -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 457 485 - -
Cpe14g00278 872 ProSitePatterns Zinc finger PHD-type signature. 339 390 IPR019786 -
Cpe14g00278 872 Pfam PHD-finger 338 393 IPR019787 -
Cpe14g00278 872 SMART HOX_1 693 755 IPR001356 GO:0003677
Cpe14g00278 872 Gene3D - 687 755 - -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 747 872 - -
Cpe14g00278 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 332 395 IPR013083 -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 204 218 - -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 199 242 - -
Cpe14g00278 872 CDD homeodomain 698 752 IPR001356 GO:0003677
Cpe14g00278 872 ProSitePatterns 'Homeobox' domain signature. 726 749 IPR017970 GO:0000981|GO:0006355
Cpe14g00278 872 MobiDBLite consensus disorder prediction 832 850 - -
Cpe14g00278 872 SMART PHD_3 338 391 IPR001965 -
Cpe14g00278 872 MobiDBLite consensus disorder prediction 600 622 - -
Cpe14g00278 872 SUPERFAMILY FYVE/PHD zinc finger 329 396 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00278 - - - cpep:111809619 1696.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00416 Cpe14g00278 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00278 Cpe-Chr14:1612991 Cpe13g00321 Cpe-Chr13:2798011 1.39E-06 dispersed
Cpe04g01322 Cpe-Chr4:10856640 Cpe14g00278 Cpe-Chr14:1612991 1.03E-11 transposed
Cpe01g00416 Cpe-Chr1:2411317 Cpe14g00278 Cpe-Chr14:1612991 1.12E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g656 Blo02g00944 Blo03g00085 Bda06g01216 Bda08g00666 Bpe07g00262 . Bma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1009 Cone10ag1026 . . . . . . . . . Bpe05g00488 . . . Cmo04g00496 Cmo16g00355 . . . . Cpe14g00278 Cpe01g00416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003741 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50491 PF00046 Homeodomain 3.20E-11 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00278 Cpe_Chr14 FPKM 0.0 0.0 0.0 0.0 3.717067 5.86249 3.137287 0.0 0.0 0.0