Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00284 ATGGCTACTTCCGCTTCGTTTACGCTCCGCAGGCCGGCGCTTGGGAACTCGGTACTTGCTTCTCTGTCTTCTAAGATTCCTGTTCCTTCGGCTTTTTCTGTTGATCTTCGTCGACGGAGTGTTGGCGCGCCGCGGTTTGTGGTGTTGGTTTCTGCGTCTATGGATGCGAAGCCGACGGTTCTTGTTGCGGAGAAGCTGGGTGAAGCGGGTCTTGATCTTCTAAAGGATTTTGCTAATGTTGATTGCTCGTATAATCTGAGTCCTGAGGAGCTTTGCACCAAGATCTCGCTCTGTGATGCGATTATTGTGCGGAGTGGGACTAAGGTCAGCCGTGAGGTGTTTGAATCCTCTGGAGGGAGGTTGAAGGTCGTTGGGAGGGCTGGTGTTGGCATTGACAACGTGGATCTGGCGGCTGCCACTGAGCATGGTTGCTTAGTGGTGAATGCTCCGACTGCAAACACGGTAGCCGCCGCTGAGCACGGAATTGCGCTTTTGACTGCAATGGCCAGAAATGTTGCTCAAGCCGATGCGTCTGTTAAAGCTGGAAAGTGGCAACGCAACAAATATGTCGGTGTATCGCTTGTGGGGAAAACACTCGCTGTAATGGGATTCGGCAAAGTTGGAACTGAAGTTGCTCGGCGTGCAAAGGGACTCGGCATGCATGTAATTGCCCACGACCCGTATGCCCCAGCTGATCGTGCTCGTGCGATAGGCGTAGAGCTTGTGAGCTTTGACGAAGCCATTGGAACTGCTGATTTCATCTCTTTGCATATGCCTTTAACTCCAGCCACGTCGAAGATCCTTAATGATGAAAATTTCGCAAAGATGAAGAAAGGAGTAAGGATTGTGAATGTTGCTCGTGGAGGCGTAATTGATGAAGAAGCTCTTGTAAGGGCTCTAGATGCTGGAATTGTTGCTCAGGCTGCACTTGATGTTTTCACTGAGGAACCACCTCCTAAAGATAGCAAGTTGATTCAGCATGAGAATGTCACTGTAACTCCTCATCTGGGTGCCAGCACAATGGAGGCTCAGGAAGGAGTTGCTGTTGAAATAGCTGAAGCTGTTGTTGGAGCCTTGAAAGGGGAGCTTGCAGCTACTGCCGTCAATGCTCCGATGGTTCCTGCAGAGGTGTTAACGGAGCTGAAACCATTTGTTGAACTTGCTGAGAAATTGGGAAGACTGGCTGTCCAATTGGTAGCAGGAGGAAGTGGCGTGAAAACTGTGAAAGTGACATACGCTTCCTCTAGAGCTCCTGATGATCTTGACACCAGGCTTCTTCGTGCCATGATAACCAAAGGTCTCATAGAACCAATTTCCAGTGTTTTCGTGAACTTGGTGAACGCTGACTTCACCGCCAAACAGAGAGGACTAAGGATATCCGAGGAGCGAGTCATTCTGGACGGGTCGCCTGAGAAACCATTAGAATACATACAGGTCCAGATTGCCAACGTGGAATCCAAATTTGCCAGTGCTATATCGGATTCTGGGGAGATAACGGTGGAAGGACTTGTGAAAGACGGAATCCCTCACCTCACAAAGGTCGGGTCTTTCGAAGTCGATGTTAGTTTGGAGGGTAGCATCATACTCTGTAGGCAGGTTGACCAGCCAGGTATGATTGGAACGGTTGGAAGCATTCTCGGAGAAGAAAATGTTAATGTGAGCTTCATGAGTGTTGGAAGGATTGCTCCTCGAAAGCAGGCTGTTATGGCCATTGGTGTCGATGAACAGCCCAGCAAGGAATCCTTGAAGAGGATCGGTGATGTTCCAGCAATTGAAGAGTTTGTTTTCCTCAAGCTAGAATGGACTGAGAAGGAACTCAGTTTGATCTTGGTCACCTTTCTCAAGTACCAAAAGAAGTCCACCTTCTCCATCCCCATGAATGCAACTCCAGCTGCAGATCCAATTATAAGCATGGATCCACCAGTGCCAGCACAAAACGCTATCAGCTGCCAGAACTCGGAATCTTGCGCGAAGGAGGAGAGATCGTACATTCCCATTGTTGCTGCAACTAATGGGACATTGTCTATAATAGCTGATATAACACCGACTGCACTCGCAATGAGTTCAGCATTCGGAATA 2079 48.97 MATSASFTLRRPALGNSVLASLSSKIPVPSAFSVDLRRRSVGAPRFVVLVSASMDAKPTVLVAEKLGEAGLDLLKDFANVDCSYNLSPEELCTKISLCDAIIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFDEAIGTADFISLHMPLTPATSKILNDENFAKMKKGVRIVNVARGGVIDEEALVRALDAGIVAQAALDVFTEEPPPKDSKLIQHENVTVTPHLGASTMEAQEGVAVEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVTYASSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRISEERVILDGSPEKPLEYIQVQIANVESKFASAISDSGEITVEGLVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDEQPSKESLKRIGDVPAIEEFVFLKLEWTEKELSLILVTFLKYQKKSTFSIPMNATPAADPIISMDPPVPAQNAISCQNSESCAKEERSYIPIVAATNGTLSIIADITPTALAMSSAFGI 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1657934 1662149 + Cp4.1LG14g04450.1 Cpe14g00284 480668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00284 693 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 162 337 IPR006140 GO:0051287
Cpe14g00284 693 SUPERFAMILY ACT-like 517 595 IPR045865 -
Cpe14g00284 693 CDD PGDH_4 60 362 - -
Cpe14g00284 693 SMART AdoHcyase_NAD_2 187 356 IPR015878 -
Cpe14g00284 693 PANTHER FORMATE DEHYDROGENASE 1 35 594 - -
Cpe14g00284 693 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 276 292 IPR029753 -
Cpe14g00284 693 SUPERFAMILY Serine metabolism enzymes domain 375 521 IPR029009 -
Cpe14g00284 693 Gene3D - 153 335 - -
Cpe14g00284 693 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 57 190 - -
Cpe14g00284 693 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 338 IPR036291 -
Cpe14g00284 693 Pfam ACT domain 527 588 IPR002912 -
Cpe14g00284 693 TIGRFAM PGDH: phosphoglycerate dehydrogenase 60 598 IPR006236 GO:0004617|GO:0006564
Cpe14g00284 693 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 247 269 IPR029753 -
Cpe14g00284 693 Gene3D - 62 362 - -
Cpe14g00284 693 CDD ACT_3PGDH-xct 528 599 - -
Cpe14g00284 693 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 380 487 IPR045626 -
Cpe14g00284 693 Gene3D - 373 525 IPR029009 -
Cpe14g00284 693 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 199 226 IPR029752 -
Cpe14g00284 693 Gene3D - 526 599 - -
Cpe14g00284 693 ProSiteProfiles ACT domain profile. 527 604 IPR002912 -
Cpe14g00284 693 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 60 369 IPR006139 GO:0016616|GO:0051287
Cpe14g00284 693 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 35 594 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00284 K00058 serA, PHGDH; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] - csv:101221689 1073.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00426 Cpe14g00284 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01750 Cpe-Chr2:14280428 Cpe14g00284 Cpe-Chr14:1657934 0 dispersed
Cpe03g01041 Cpe-Chr3:8484925 Cpe14g00284 Cpe-Chr14:1657934 0 dispersed
Cpe14g00284 Cpe-Chr14:1657934 Cpe17g00555 Cpe-Chr17:4581090 2.33E-27 dispersed
Cpe01g00426 Cpe-Chr1:2460939 Cpe14g00284 Cpe-Chr14:1657934 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g618 Blo02g00840 . . Bda08g00769 . . Bma05g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00509 Cmo16g00367 . . . . Cpe14g00284 Cpe01g00426 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001181 3 2 4 3 3 1 4 2 2 2 2 2 3 2 2 4 2 6 4 2 2 2 3 2 2 2 2 3 2 3 78
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00284 Cpe_Chr14 FPKM 2.996678 4.429215 1.083933 1.386264 3.009919 1.107116 2.740501 0.233559 0.201051 0.485224