Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00286 ATGGCAATACATCGGTATGAACAAGCTGATGATGAAGGCCAAACCCATTTGTTTCCGCTAGATTCTTTGTTCTGTGAGGAGAAATGGGGGGAGGAGGAGGAAGATAAGGCTGAGGTAGAACATACCCATCAGACCCATCTTTTTTCTTTGGGATTTTTGGAGGAAGATCTCTCTGGGGAAGATGAACGGCTTCTCTCCATGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCGAGCTTGAAGTTCTGTTGAAGGATCCTTCTGTCTCTGCTGCTCGTTCTTCAGCTGTGGAGTGGATACTCAAAGTCCAATCCCATTATGGGTTCTCAACTCTCACTGCCATTTTGGCCGTTGCTTATTTCGACAGGTTCCTCTTGAGCCTCCATTTTAAGAGTGACAAGCCGTGGATGAGCCAGCTTGTGGCTGTCACTTGCCTCTCCTTGGCGAGTAAAGTGGAGGAGATTGAAGTTCCACTTCTGCTGGACCTTCAAGTAGAGGATGCCAAATATGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAATGGAGAATGCATTTGGTGACTCCATATTCTTTTCTTGATCACATTGTAAGGAGGCTTGGGTTAAAGTCCAATCTTCACTTAGAGTTCTTCAGGCGTTCTGAGCATCTTCTCATCTCTCAACTCTCAGATTCAAGATTTGTTGGTTATCTTCCATCTATCTTGGCAACTGCAACAATGATGGGAGTGATAGATCAGATTGAGCCCCATATGTCATTGGAGCGCCGAGATCAGCTTCTGGGTGTCCTCAAAATTGACAAGGAGAAAGTGCAATGCTGTTACAATCTTGTCAAGGAGCATTCTAAGGCCTATGGCAATGGCAATGGCATTTATCATCCCAACACCCCCCACAAGCGCAAGCATGAACAGCAAGCTCCTGATAGCCCAAGTGGTGTAATCGATGCTGGTTTCACTTCAGACAGCTCCGATGATTCTTGGGCTTTGAAAGCAGCATCAGTCTGTTCATCACCTGAACCTTCTTTCAAGAAGAGCAAAACCGAAGAGCCAAAGATGAAGTTTCATTCTCTTAACAGGCCATTTCTGGACATCGTTGGCAGCCCTTCTTGA 1137 45.65 MAIHRYEQADDEGQTHLFPLDSLFCEEKWGEEEEDKAEVEHTHQTHLFSLGFLEEDLSGEDERLLSMLSKETEQLKQSNLELEVLLKDPSVSAARSSAVEWILKVQSHYGFSTLTAILAVAYFDRFLLSLHFKSDKPWMSQLVAVTCLSLASKVEEIEVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPYSFLDHIVRRLGLKSNLHLEFFRRSEHLLISQLSDSRFVGYLPSILATATMMGVIDQIEPHMSLERRDQLLGVLKIDKEKVQCCYNLVKEHSKAYGNGNGIYHPNTPHKRKHEQQAPDSPSGVIDAGFTSDSSDDSWALKAASVCSSPEPSFKKSKTEEPKMKFHSLNRPFLDIVGSPS 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1670885 1675313 - Cp4.1LG14g04220.1 Cpe14g00286 480670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00286 378 Coils Coil 68 88 - -
Cpe14g00286 378 Pfam Cyclin, C-terminal domain 197 296 IPR004367 -
Cpe14g00286 378 PANTHER CYCLIN-D3-2 14 361 - -
Cpe14g00286 378 SMART cyclin_7 100 188 IPR013763 -
Cpe14g00286 378 MobiDBLite consensus disorder prediction 296 333 - -
Cpe14g00286 378 ProSitePatterns Cyclins signature. 95 126 IPR006671 -
Cpe14g00286 378 Gene3D - 77 195 - -
Cpe14g00286 378 PANTHER CYCLINS 14 361 IPR039361 -
Cpe14g00286 378 SMART Cyclin_C_2 197 316 IPR004367 -
Cpe14g00286 378 Pfam Cyclin, N-terminal domain 75 194 IPR006671 -
Cpe14g00286 378 Gene3D - 66 285 - -
Cpe14g00286 378 SUPERFAMILY Cyclin-like 61 195 IPR036915 -
Cpe14g00286 378 CDD CYCLIN 95 187 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00286 K14505 CYCD3; cyclin D3, plant - csv:101221213 644.425
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g00298 Cpe14g00286 CCT
Cpe14g00286 Cpe15g00473 CCT
Cpe14g00286 Cpe15g00473 ECH
Cpe04g00298 Cpe14g00286 ECH
Cpe01g00427 Cpe14g00286 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00298 Cpe-Chr4:3757790 Cpe14g00286 Cpe-Chr14:1670885 6.83E-89 dispersed
Cpe06g00180 Cpe-Chr6:976067 Cpe14g00286 Cpe-Chr14:1670885 3.83E-88 dispersed
Cpe07g00498 Cpe-Chr7:3257734 Cpe14g00286 Cpe-Chr14:1670885 2.75E-97 dispersed
Cpe14g00286 Cpe-Chr14:1670885 Cpe15g00473 Cpe-Chr15:5737985 8.86E-89 dispersed
Cpe01g00427 Cpe-Chr1:2468894 Cpe14g00286 Cpe-Chr14:1670885 0 wgd
Cpe11g00137 Cpe-Chr11:738016 Cpe14g00286 Cpe-Chr14:1670885 6.56E-102 wgd
Cpe14g00286 Cpe-Chr14:1670885 Cpe19g00642 Cpe-Chr19:5181481 4.94E-86 wgd
Cpe14g00286 Cpe-Chr14:1670885 Cpe02g00199 Cpe-Chr2:1031220 3.07E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g609 Blo02g00838 . . Bda08g00772 . . Bma05g00508 . Cmo19g00602 Cmo11g01386 . . . . . Cpe04g00298 Cpe15g00473 . . . . . . . Cla02g00627 Cam02g0660 Cec02g0664 Cco02g0687 Clacu02g0668 Cmu02g0662 Cre02g0981 . Cone8ag1114 . . Lsi03g00524 Csa07g00732 . Cme01g00076 . . Bda15g00846 Bda14g01452 . . Bma03g01357 . . Cmo04g00511 Cmo16g00370 Cma11g01728 Cma19g00585 Car11g01112 . Cpe14g00286 Cpe01g00427 . . . . . . . . . . . . . . . . Chy01g00082 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003809 3 1 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00286 Cpe_Chr14 FPKM 2.077206 1.766403 4.650852 3.98123 12.090419 11.792108 11.371019 2.964658 2.601287 2.714317