Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00289 ATGGCGGCTCAGGTGCAATCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTTAACGTCACGGATTCGCAGCTTTATGATATATTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGCGTTTGCCGAGACTTGACGACCCGGCGATCTCTTGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAATTTTACCCCTCTTAATGGAAAGCCTATAAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCAGGAAATATATTTATCAAGAATTTAGACAAAGCAATTGACCACAAAGCTCTGCATGATACGTTTTCTGCATTTGGTAGTATCCTGTCCTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGGCCAGAAAGCAATTGAGAAGCTGAACGGCATGCTGTTGAATGATAAGCAAGTTTACGTAGGACCTTTTCTTCGTAAGCAAGAAAGAGACGGTGTTGTTGACAAGTTGAAATTTAACAACGTTTTTGTAAAGAATTTTTCTGAGACAACTTCTGAAGAAGAATTGAATGATGTTTTTTCTGAATTTGGGACAATCACCAGTATTGTTGTGATGAGGGATGCTGATGGAAAATCAAAATGCTTTGGATTTGTGAATTTTGAAAGTGCCGATGATGCTGCTAGAGCAGTTGATGCCCTTAATGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCCCAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGAACCGATTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCGAACTTATACATTAAAAATTTGGATGATAGCATTGTTGATGATAAGCTTAAGGAGCTGTTTGCTTCATTTGGCACAATCACATCATGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGGGGATCTGGATTTGTTGCATTCTCAACACCCGAAGAGGCTTCTAGGGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCGTTGTATGTAGCACTTGCACAGCGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAATTCTCTCAAATACGGCCAGTTTCGATGGCTGCTTCAGTTGCCCCTCGGATGCCAATGTATCCCCCGGGTGGTCCAGGTATCGGACAGCAGTTGTTTTATGGTCAAGGTCCTCCTGCAATGATTCCTTCCCAAGGCGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGTCCAATGCCGAATTTCTTTGTCCCAATGGTTCAGCAGGGCCAGCAAGGCCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAAACCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGGCGTGTCTACCGCTATCCCCCAGGAAGAGGTATGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGAAATGGGAGGCATGCCAATGCCATTGCGTGATGCGGCCCATTCTCAACCCATCCCTATAGGTGCTCTGGCTTCTGCTCTGGCAAATGCTACTCCAGACCAACAGAGAACGATGCTGGGGGAGAATCTGTACCCGCTCGTGGAACAGTTGGAGCCCGACAACGCAGCTAAGGTAACTGGAATGCTTCTGGAGATGGACCAAACTGAGGTTTTGCATTTACTCGAGTCCCCGGAGGCTTTGAAGGCGAAAGTAGCCGAGGCTATGGAGGTTTTGAGGAATGTAGCTGCAGCCCAGCAGCAGCAAGCTGGGAACGCAGCTGATCAGCTAGCCTCTCTGTCGCTGACCGAGAACCTCGTGTCGTGA 1968 47.1 MAAQVQSQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESGQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKLKFNNVFVKNFSETTSEEELNDVFSEFGTITSIVVMRDADGKSKCFGFVNFESADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKNRFEQTMKEAADKYQGANLYIKNLDDSIVDDKLKELFASFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVSMAASVAPRMPMYPPGGPGIGQQLFYGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQNQQPVPMMQQQMLPRGGRVYRYPPGRGMPDVPMPGVAGGMFSVPYEMGGMPMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNAADQLASLSLTENLVS 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1694337 1699206 + Cp4.1LG14g04280.1 Cpe14g00289 480673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00289 655 CDD RRM1_I_PABPs 30 109 - -
Cpe14g00289 655 SMART rrm2_1 30 103 IPR003954 GO:0003676
Cpe14g00289 655 SMART rrm2_1 209 281 IPR003954 GO:0003676
Cpe14g00289 655 SMART rrm2_1 312 384 IPR003954 GO:0003676
Cpe14g00289 655 SMART rrm2_1 118 190 IPR003954 GO:0003676
Cpe14g00289 655 Pfam Poly-adenylate binding protein, unique domain 562 626 IPR002004 GO:0003723
Cpe14g00289 655 Gene3D - 119 197 IPR012677 -
Cpe14g00289 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Cpe14g00289 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Cpe14g00289 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Cpe14g00289 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Cpe14g00289 655 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Cpe14g00289 655 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Cpe14g00289 655 SUPERFAMILY RNA-binding domain, RBD 208 391 IPR035979 GO:0003676
Cpe14g00289 655 Gene3D - 198 293 IPR012677 -
Cpe14g00289 655 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 627 IPR006515 GO:0003723
Cpe14g00289 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Cpe14g00289 655 SUPERFAMILY PABC (PABP) domain 495 647 IPR036053 GO:0003723
Cpe14g00289 655 Gene3D - 550 631 - -
Cpe14g00289 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Cpe14g00289 655 CDD RRM4_I_PABPs 310 388 - -
Cpe14g00289 655 Gene3D - 294 396 IPR012677 -
Cpe14g00289 655 Gene3D - 1 118 IPR012677 -
Cpe14g00289 655 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 631 IPR002004 GO:0003723
Cpe14g00289 655 PANTHER RNA BINDING PROTEIN 18 636 - -
Cpe14g00289 655 SMART rrm1_1 209 281 IPR000504 GO:0003723
Cpe14g00289 655 SMART rrm1_1 30 103 IPR000504 GO:0003723
Cpe14g00289 655 SMART rrm1_1 118 190 IPR000504 GO:0003723
Cpe14g00289 655 SMART rrm1_1 312 384 IPR000504 GO:0003723
Cpe14g00289 655 CDD RRM2_I_PABPs 115 191 IPR045305 -
Cpe14g00289 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Cpe14g00289 655 SMART poly_2 566 629 IPR002004 GO:0003723
Cpe14g00289 655 PANTHER POLYADENYLATE-BINDING PROTEIN 18 636 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe14g00289 Cpe15g00480 CCT
Cpe04g00290 Cpe14g00289 CCT
Cpe14g00289 Cpe15g00480 ECH
Cpe04g00290 Cpe14g00289 ECH
Cpe01g00431 Cpe14g00289 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00290 Cpe-Chr4:3623251 Cpe14g00289 Cpe-Chr14:1694337 0 dispersed
Cpe08g00113 Cpe-Chr8:728182 Cpe14g00289 Cpe-Chr14:1694337 6.35E-07 dispersed
Cpe13g00706 Cpe-Chr13:6557787 Cpe14g00289 Cpe-Chr14:1694337 0 dispersed
Cpe14g00289 Cpe-Chr14:1694337 Cpe15g00480 Cpe-Chr15:5807407 0 dispersed
Cpe01g00431 Cpe-Chr1:2489190 Cpe14g00289 Cpe-Chr14:1694337 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00289 K13126 - csv:101219802 1170.99