Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00292 ATGGCGGCGGCCACCGCACTGAGCAGAGCTTTGTTTCTAATGGGGTTTCTTCTATTTCTTCAGCTGCAGCTTCCTGAAACAATGGCGGATTGTCCCTTGGATTTGAGTGGATCAAACTTTACTTTAGTTGCTTCTATTTGTTCTAACCCCAACGAAAGAGGGAAGTGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTGGCTCAGCTTGCAAATTCAACTGGTGAACTAGGAGTTTCTTCAAACTTAACCAACATTTGCCTGCAATCCATATCTCAAACCATGGAACTCTATGGAGTTCCTAGAAATGCCATGGTTTTCTGTGGGGTTGGAACGAAAATTCCAGTAAACTACGCGTGTAGAGGCCGAGAAACCGTCACGCAGATGCTGGAATCTCCGAAGTTCACGAAAGTTGGGGAGAATTGCAGATTGCTGCTATCAGAGGAGAGTGCTTGTAGGAAGTGTATCAATGCTGGGATTTTATATCTCCGCAATCTTATTGGAAGAGAAGATAATATAACATTGAATACCTGTCGTGATGCTACGTTTGTTGCACTTGCTAGCCAACTTGATGCTGCTTCAGTGATTGATCTTGCAAGCTGCTTCTTTGGAGTTCAAGGTCTTAACAGGCCTCCAGCTCCACCTCCATCTTCGGCTACCCTGGATATTTCCCCAAGTCCATCAGCTGCTGCAAGTCCCGGGCCACTGGCGCTAGGTGTTTCTGATGGTAAACGTCGTCGACATCATTCCTACCATGTAACATTAGTGGCAGGTATTGGCATTGCAGTGACTGTAGCTTCTGTAATGATGCTGGTTGTCTTGATTGTGCTGATCCGAAGGAAAAGCAGAGAGCTAAAGGATTCCGAGAAGACGGATGCGAACTCTTCAAGATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGCTCCACCTCCATCTTCGGCTACCCTGGATATTTCCCCAAGTCCATCAGCTGCTGCAAGTCCCGGGCCACTGGCGCTAGGTGTTTCTGATGGTAAACGTCGTCGACATCATTCCTACCATGTAACATTAGTGGCAGGTATTGGCATTGCAGTGACTGTAGCTTCTGTAATGATGCTGGTTGTCTTGATTGTGCTGATCCGAAGGAAAAGCAGAGAGCTAAAGGATTCCGAGAAGACGGATGCGAACTCTTCAAGATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCCATGTTTAAAAAGTTCAGCTATAAGGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGACAAGGAGGATACGGGACTGTTTATAAAGCTCAATTCAGTGAAGACTTAGTGTTAGCTGTGAAGAGGATGAACAAAGTCTCCGAGCAGGGGGAGGATGAATTTGGCAGAGAAATCGAGCTGCTTGCGAGATTACATCACCGACATCTCGTTGCTTTAAGAGGCTTTTGTGTCGAAAAGCATGAACGGTTTCTTGTGTATGAGTATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCAGACAAGAATCCAAATCGCCATCGATGTCGCTAATGCTCTGGTTGCCGATTTTGGCCTTGCACACGCTTCAAAGGGTGGTTCGGTTTTCTTTGAACCCGTTAATACCGATATCCGGGGAACGCCAGGTTATATGGATCCTGAGTACGTTATCACGCAAGAGCTTACTGAGAAAAGTGATATATACAGCTACGGCGTGCTACTTCTGGAAATAGTTACAGGCAGACGGGCGATACAAGACGGGAAGAACTTGGTTGAATGGTGTCCCTAG 1830 46.17 MAAATALSRALFLMGFLLFLQLQLPETMADCPLDLSGSNFTLVASICSNPNERGKCCRYINAFVAVSVAQLANSTGELGVSSNLTNICLQSISQTMELYGVPRNAMVFCGVGTKIPVNYACRGRETVTQMLESPKFTKVGENCRLLLSEESACRKCINAGILYLRNLIGREDNITLNTCRDATFVALASQLDAASVIDLASCFFGVQGLNRPPAPPPSSATLDISPSPSAAASPGPLALGVSDGKRRRHHSYHVTLVAGIGIAVTVASVMMLVVLIVLIRRKSRELKDSEKTDANSSRSFPSRPIKKYQEAPPPSSATLDISPSPSAAASPGPLALGVSDGKRRRHHSYHVTLVAGIGIAVTVASVMMLVVLIVLIRRKSRELKDSEKTDANSSRSFPSRPIKKYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFSEDLVLAVKRMNKVSEQGEDEFGREIELLARLHHRHLVALRGFCVEKHERFLVYEYMANGSLKDHLHAPGRTPLSWQTRIQIAIDVANALVADFGLAHASKGGSVFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWCP 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1714613 1720884 + Cp4.1LG14g04310.1 Cpe14g00292 480676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00292 609 Pfam Protein kinase domain 535 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe14g00292 609 MobiDBLite consensus disorder prediction 287 341 - -
Cpe14g00292 609 PANTHER OS01G0750732 PROTEIN 9 311 - -
Cpe14g00292 609 PANTHER OS01G0750732 PROTEIN 534 608 - -
Cpe14g00292 609 PANTHER BNAC06G02630D PROTEIN 9 311 - -
Cpe14g00292 609 PANTHER BNAC06G02630D PROTEIN 534 608 - -
Cpe14g00292 609 PANTHER OS01G0750732 PROTEIN 312 534 - -
Cpe14g00292 609 ProSiteProfiles Protein kinase domain profile. 425 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe14g00292 609 PANTHER BNAC06G02630D PROTEIN 312 534 - -
Cpe14g00292 609 Gene3D Transferase(Phosphotransferase) domain 1 405 534 - -
Cpe14g00292 609 ProSitePatterns Protein kinases ATP-binding region signature. 431 453 IPR017441 GO:0005524
Cpe14g00292 609 Pfam SPARK 29 161 IPR043891 -
Cpe14g00292 609 Gene3D Transferase(Phosphotransferase) domain 1 535 609 - -
Cpe14g00292 609 Pfam Protein tyrosine and serine/threonine kinase 427 533 IPR001245 GO:0004672|GO:0006468
Cpe14g00292 609 MobiDBLite consensus disorder prediction 214 244 - -
Cpe14g00292 609 SUPERFAMILY Protein kinase-like (PK-like) 404 600 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00292 - - - cpep:111810374 574.318
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00438 Cpe14g00292 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00452 Cpe-Chr5:2610480 Cpe14g00292 Cpe-Chr14:1714613 1.31E-32 dispersed
Cpe14g00292 Cpe-Chr14:1714613 Cpe01g00836 Cpe-Chr1:4957749 2.68E-51 dispersed
Cpe01g00438 Cpe-Chr1:2522297 Cpe14g00292 Cpe-Chr14:1714613 2.47E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g395 Blo02g00798 Blo15g00749 . Bda08g00923 Bpe07g00376 . Bma05g00474 Bma12g00444 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1180 Cone10ag0989 . . . . . . . . . . . . . . . . . . . Cpe14g00292 Cpe01g00438 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0055408 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62826 PF19160 SPARK 5.80E-17 No_clan Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00292 Cpe_Chr14 FPKM 2.978052 3.487642 12.25701 11.5667 2.981149 2.449963 2.973939 7.747879 8.579296 9.14665