Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00293 ATGTGGGCCAAAGTGTTTACAGCTCTCGGATGGAGTATTGCAGCACCAGCAGAATCCCTTGATTGGCTTCATTTGATACTGATAGATCATCCTTTCAAGTCTATAAAGAGCACCTTGTGGAATGGATATAGTATAGTAATGACCACCAGTCTCTCATCAGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCACCAGTGCAGGCTAAGACTGAGAATGCCCTTGCAGGTGCTTTCATTTCAAATTGTGATGCTCGTAACTTCCGCTTGGAAGCTCTTGTGGCTCTTGAAAAACTGAACGTCACAATCGATTCATATGGTGCTTGCCACAGAAATCGTGATGGAAGCACAGTGGACAAACTAGAGACTCTAAAGCACTACAGGTTCAGCTTGGCTTTTGAGAATTCCAACGAGGAAGATTATGTGACTGAAAAATATTTCCAATCTCTAGTTGCTGGAGCCGTTCCAGTGGTTATTGGAGCTCCAAACATTCAAGAGTTTGCTCCTTCACCTGCTTCGCTTTTGCATATCAGGAAGCTTTCAGATGTTGAGTCAGTTGCCAACTCTATGAAATACCTTGCAGCAAATCCTGAGGCATTCAACAACTCATTGAGGTGGAAATATGAGGGTCCATCCGACTCTTTCAAGGCACTATTGGATATGGCAGCAGTTCATTCGTCATGTCGCCTTTGCATTCATTTGGCAACTAGTATTCATGAGACAGAAGAAAAGGGTCTAGCGTTTAAAAATCGACCCTGTAAATGCACCAGAGGTCCGGAGACCGTTTATCACTTATATGTGAGGGAAAGAGGAAGGTTTGATTCAGAGTCCATTTTCTTGAGGTCTAGTAATCTGACGGTTGAAGGGCTGGCGTCAGCAGTGGTTTCGAAGTTCAAATCGCTGAAGCACGAACCGATTTGGAAGCAGGAGAGGCCTAAGAGCTTAAAAGGAGGGGACGAATTAAGGTTGTATAAGATATACCCAGTTGGGTTGACACAGAGGCAAGCTTTATATACCTTCAAATTTCAGGGGGACTCTGATCTCAGAACACACGTGGAAGATAACCCGTGTGCCAAATTTGAAGCCATTTTTGTATAG 1110 44.05 MWAKVFTALGWSIAAPAESLDWLHLILIDHPFKSIKSTLWNGYSIVMTTSLSSDVPVGYFSWAEYDIMAPVQAKTENALAGAFISNCDARNFRLEALVALEKLNVTIDSYGACHRNRDGSTVDKLETLKHYRFSLAFENSNEEDYVTEKYFQSLVAGAVPVVIGAPNIQEFAPSPASLLHIRKLSDVESVANSMKYLAANPEAFNNSLRWKYEGPSDSFKALLDMAAVHSSCRLCIHLATSIHETEEKGLAFKNRPCKCTRGPETVYHLYVRERGRFDSESIFLRSSNLTVEGLASAVVSKFKSLKHEPIWKQERPKSLKGGDELRLYKIYPVGLTQRQALYTFKFQGDSDLRTHVEDNPCAKFEAIFV 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1719598 1723955 - Cp4.1LG14g04250.1 Cpe14g00293 480677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00293 369 PANTHER GLYCOPROTEIN 3-ALPHA-L-FUCOSYLTRANSFERASE A 41 346 - -
Cpe14g00293 369 Gene3D - 37 218 IPR038577 -
Cpe14g00293 369 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 41 346 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cpe14g00293 369 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 37 242 - -
Cpe14g00293 369 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 77 243 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00293 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - csv:101202837 595.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02150 Cpe-Chr1:18090933 Cpe14g00293 Cpe-Chr14:1719598 1.02E-14 dispersed
Cpe13g00716 Cpe-Chr13:6625699 Cpe14g00293 Cpe-Chr14:1719598 7.46E-15 dispersed
Cpe14g00293 Cpe-Chr14:1719598 Cpe15g00486 Cpe-Chr15:5844027 0 dispersed
Cpe01g00439 Cpe-Chr1:2526392 Cpe14g00293 Cpe-Chr14:1719598 1.12E-16 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01481 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.0 3.0e-155 545.8
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.0 6.5e-150 528.1
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.6e-148 523.5
Cpe01g01481 . 81 569 Xyloglucan Fucosyltransferase1 AT1G14100 56.9 3.4e-164 575.5
Cpe20g00012 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.1 2.5e-159 559.3
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 1.4e-157 553.5
Cpe01g01481 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 4.3e-137 485.3
Cpe20g00012 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 1.7e-133 473.4
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 2.3e-189 659.1
Cpe14g00293 . 30 369 Xyloglucan Fucosyltransferase1 AT1G49710 69.5 7.6e-140 494.6
Cpe13g00716 CCT 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 4.0e-168 588.2
Cpe01g02150 . 7 413 Xyloglucan Fucosyltransferase1 AT1G71990 66.9 1.8e-160 562.8
Cpe01g01481 . 6 568 Xyloglucan Fucosyltransferase1 AT2G03210 56.2 2.8e-183 639.0
Cpe20g00012 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.6 4.8e-167 585.1
Cpe02g01051 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 1.7e-164 576.6
Cpe14g00402 . 14 507 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 7.2e-139 491.5
Cpe01g01481 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.0 9.0e-203 703.7
Cpe02g01051 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.6 3.4e-186 648.7
Cpe20g00012 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 7.9e-183 637.5
Cpe14g00402 . 13 504 Xyloglucan Fucosyltransferase1 AT2G03220 53.0 5.2e-150 528.5
Cpe01g01481 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 3.0e-152 535.8
Cpe20g00012 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 2.1e-145 513.1
Cpe01g01481 . 101 568 Xyloglucan Fucosyltransferase1 AT2G15370 52.3 9.6e-146 514.2
Cpe20g00012 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 50.6 3.9e-139 492.3
Cpe01g01481 . 92 568 Xyloglucan Fucosyltransferase1 AT2G15390 53.3 1.9e-149 526.6
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.7 3.8e-142 502.3
Cpe02g01051 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 7.2e-141 498.0
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 65.1 1.6e-190 662.9
Cpe14g00293 . 42 369 Xyloglucan Fucosyltransferase1 AT3G19280 75.3 9.1e-146 514.2
Cpe01g01481 . 6 568 Xyloglucan Fucosyltransferase1 AT2G03210 56.2 2.8e-183 639.0
Cpe20g00012 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.6 4.8e-167 585.1
Cpe02g01051 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 1.7e-164 576.6
Cpe14g00402 . 14 507 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 7.2e-139 491.5
Cpe01g01481 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.0 9.0e-203 703.7
Cpe02g01051 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.6 3.4e-186 648.7
Cpe20g00012 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.2 7.9e-183 637.5
Cpe14g00402 . 13 504 Xyloglucan Fucosyltransferase1 AT2G03220 53.0 5.2e-150 528.5
Cpe01g01481 . 6 568 Xyloglucan Fucosyltransferase1 AT2G03210 56.2 2.8e-183 639.0
Cpe20g00012 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.6 4.8e-167 585.1
Cpe02g01051 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.7 1.7e-164 576.6
Cpe14g00402 . 14 507 Xyloglucan Fucosyltransferase1 AT2G03210 50.1 7.2e-139 491.5
Cpe01g01481 . 92 568 Xyloglucan Fucosyltransferase1 AT2G15390 53.3 1.9e-149 526.6
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.7 3.8e-142 502.3
Cpe02g01051 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 7.2e-141 498.0
Cpe01g01481 . 101 568 Xyloglucan Fucosyltransferase1 AT2G15370 52.3 9.6e-146 514.2
Cpe20g00012 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 50.6 3.9e-139 492.3
Cpe01g01481 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.0 3.0e-155 545.8
Cpe20g00012 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.0 6.5e-150 528.1
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14080 52.0 1.6e-148 523.5
Cpe01g01481 . 81 569 Xyloglucan Fucosyltransferase1 AT1G14100 56.9 3.4e-164 575.5
Cpe20g00012 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.1 2.5e-159 559.3
Cpe02g01051 . 94 582 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 1.4e-157 553.5
Cpe01g01481 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 4.3e-137 485.3
Cpe20g00012 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 1.7e-133 473.4
Cpe01g01481 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 3.0e-152 535.8
Cpe20g00012 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 2.1e-145 513.1
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 65.1 1.6e-190 662.9
Cpe14g00293 . 42 369 Xyloglucan Fucosyltransferase1 AT3G19280 75.3 9.1e-146 514.2
Cpe15g00486 CCT 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 2.3e-189 659.1
Cpe14g00293 . 30 369 Xyloglucan Fucosyltransferase1 AT1G49710 69.5 7.6e-140 494.6
Cpe13g00716 CCT 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.7 4.0e-168 588.2
Cpe01g02150 . 7 413 Xyloglucan Fucosyltransferase1 AT1G71990 66.9 1.8e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00293 Cpe_Chr14 FPKM 12.650282 13.534084 10.585846 12.747705 13.735951 14.939282 13.905521 10.975809 11.081966 10.495262