Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00297 ATGTCCTCTCTCTCAGCTCCCTTTCTCTCCCCTCCGGCAGCTGCCACCCGCCGTGGATGGCGTCGAGTGACGGCAGCGCCGATTACAACAGCGCCGGCGGAGGTGGCGGTGGAGGAGGCGAGGCTGGAGGCAAGAGTGGAGGAGAGAGAAGGGTATTGGGTGGTGAAGGAGAAATTTAGAGAAGGGATTAACCCACAAGAGAAAGTGAAGATAGAGAAAGAGCCAATGAAATTGTTCATGGAGAATGGAATTGAAGAGCTCTCAAAGTTGTCAATGGAGGAAATTGATGCCTCTAAGCTTACTAAAGATGATGTTGATGTTAGACTCAAATGGCTTGGCCTTTTCCATAGAAGAAAACATCAATATGGGAGATTTATGATGAGATTAAAGCTGCCAAATGGGGTGACAACAAGCGAACAGACGAGATATTTGGCGAGTGTGATCCGGAAGTACGGGAAAGACGGCTGCGCCGATGTGACGACGCGGCAGAATTGGCAGATTCGCGGCGTGGTTCTAGGGGATGTGCCGGAAATTCTGAAAGGATTGGCTGGAGTTGGGCTGACGAGTCTGCAGAGTGGAATGGATAATGTGAGAAATCCCGTTGGAAATCCCCTCGCCGGTATTGATCCTGAGGAGATCGTCGATACTAGGCCTTACAATAATTTGCTCTCGCAATTCATCACTGGAAATTCCCTTGGAAATCCTGCGTTCACTAATTTGCCAAGAAAATGGAATGTGTGCGTGATAGGATCACACGATCTATACGAACATCCTCACATAAACGACCTTGCATACATGCCCGCCACGAAGAATGGACGAATGGGCTTCAACGTGCTAGTGGGTGGGTTCTTCAGCGCCAAGCGGTGCGCCGAGGCAGTGCCGCTCGACGCTTGGGTGCCGGAAGAGGACGTGGTCCCTCTTTGCGGAGCTGTCTTGGAGGCTTACAGGGACCTCGGCACCAGAGGCAACCGCCAGAAGTGTAGAATGATGTGGCTCATCGATGAACTGGGTTTAGAAGGATTTAGAGCTGAAGTAGTGAAGAGAATGCCAAGACAAGAGTTGGAGAGAGCATCACCGGAGGATTTGGTAAAGAAGGAATGGGAAAGAAGGGACTATTATGGAGTGCATCCACAAAAGCAAGAAGGTTTAAGCTTCGTAGGAGTTCACATTCCTGTTGGTCGAGTTCAAGCGGATGAAATGGACGAATTGGCTCGACTCGCCGATGAATACGGCACAGGGGAGCTCAGATTGACAGTGGAACAAAACATAATCATCCCCAACATTCAAAACTCAAGGTTAGAAGCCTTAGTGAAAGAGCCTCTATTTGACAAGTTTTCACTAGAGCCACCAATTCTCATGAAAGGATTGGTAGCCTGCACTGGCAACCAATTCTGTGGACAAGCCATTATAGAGACGAAGGCTAGGGCATTGAAGGTGACTGAGGAGGTGCAACAGCGAGTCACGGTGAGCCGACCGGTGAGGATGCATTGGACCGGTTGCCCAAATACCTGTGGGCAGGTTCAGGTTGCTGATATTGGGTTCATGGGGTGCATGGCTAGGGATGAGAATAAGAAGCCTGTTGAAGGGGTTGATGTGTTCTTGGGTGGGAGAATTGGGAGTGACTCACATTTGGGAGATAAATCCCCGCTGGCCCAACTCCACCGAGTGCCAATTTGCGTTGTAATGATGCCACGTCATCAACCTCTCCGTATATATACCTCACTCTTCACTTCAACTCCTAAACCCCCAATTCCAAATTCTCAATTTCTCTCTCTCGTGACCTCTCGATCTCGATCCACGGAATCGCCGGAATCGTATCACTTCTCTTTTCCGCCGCATTCCATGGCGGATAGGTTTTGGCGCGAGCTTCAAATTCCGCTTCCTACATTTGATTGTGCCGCCTCCGCCTCCGCTTCTGATTTCTTCTCCGCTTCTGCAACTACTTCTTCCATCAGTTGTTCGAGTACGGACGCGATTTTCTCTCCCTCTGTTTTCGAGACGTGTAGTGTTTGTCGAATCGATGGCTGTTTAGGCTGCGATTTCTTCCCGCCGTCATCAAATTCGGCGGCCAATGGAATCGAAAATGAAGATGAAATATGGAGGAAGATTGAGAAGGATGAAATGGATCAATGGATCTCGTCGCTGATCACGGATCACGGCGGCGATTCGTCAGACTCCACCAGTATTGGGGCT 2193 49.79 MSSLSAPFLSPPAAATRRGWRRVTAAPITTAPAEVAVEEARLEARVEEREGYWVVKEKFREGINPQEKVKIEKEPMKLFMENGIEELSKLSMEEIDASKLTKDDVDVRLKWLGLFHRRKHQYGRFMMRLKLPNGVTTSEQTRYLASVIRKYGKDGCADVTTRQNWQIRGVVLGDVPEILKGLAGVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYNNLLSQFITGNSLGNPAFTNLPRKWNVCVIGSHDLYEHPHINDLAYMPATKNGRMGFNVLVGGFFSAKRCAEAVPLDAWVPEEDVVPLCGAVLEAYRDLGTRGNRQKCRMMWLIDELGLEGFRAEVVKRMPRQELERASPEDLVKKEWERRDYYGVHPQKQEGLSFVGVHIPVGRVQADEMDELARLADEYGTGELRLTVEQNIIIPNIQNSRLEALVKEPLFDKFSLEPPILMKGLVACTGNQFCGQAIIETKARALKVTEEVQQRVTVSRPVRMHWTGCPNTCGQVQVADIGFMGCMARDENKKPVEGVDVFLGGRIGSDSHLGDKSPLAQLHRVPICVVMMPRHQPLRIYTSLFTSTPKPPIPNSQFLSLVTSRSRSTESPESYHFSFPPHSMADRFWRELQIPLPTFDCAASASASDFFSASATTSSISCSSTDAIFSPSVFETCSVCRIDGCLGCDFFPPSSNSAANGIENEDEIWRKIEKDEMDQWISSLITDHGGDSSDSTSIGA 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1740110 1744310 - Cp4.1LG14g04230.1 Cpe14g00297 480681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00297 731 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 6 546 - -
Cpe14g00297 731 Gene3D Sulfite Reductase Hemoprotein, domain 1 450 558 IPR045854 -
Cpe14g00297 731 Gene3D Sulfite Reductase Hemoprotein, domain 1 186 371 IPR045854 -
Cpe14g00297 731 Gene3D - 62 442 - -
Cpe14g00297 731 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 330 465 IPR036136 GO:0016491
Cpe14g00297 731 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 194 351 IPR045854 -
Cpe14g00297 731 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 454 547 IPR045854 -
Cpe14g00297 731 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 498 514 IPR006066 GO:0016491|GO:0020037|GO:0051536
Cpe14g00297 731 PANTHER FERREDOXIN--NITRITE REDUCTASE, CHLOROPLASTIC 6 546 - -
Cpe14g00297 731 Pfam Nitrite and sulphite reductase 4Fe-4S domain 457 549 IPR006067 GO:0016491|GO:0020037|GO:0051536
Cpe14g00297 731 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 42 193 IPR036136 GO:0016491
Cpe14g00297 731 PRINTS Sirohaem Fe-binding site signature 498 516 IPR006066 GO:0016491|GO:0020037|GO:0051536
Cpe14g00297 731 PRINTS Sirohaem Fe-binding site signature 454 472 IPR006066 GO:0016491|GO:0020037|GO:0051536
Cpe14g00297 731 Pfam Nitrite and sulphite reductase 4Fe-4S domain 194 351 IPR006067 GO:0016491|GO:0020037|GO:0051536
Cpe14g00297 731 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 376 439 IPR005117 GO:0016491
Cpe14g00297 731 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 119 183 IPR005117 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00297 K00366 nirA; ferredoxin-nitrite reductase [EC:1.7.7.1] - csv:101217505 1034.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00914 Cpe-Chr4:8323004 Cpe14g00297 Cpe-Chr14:1740110 2.22E-24 dispersed
Cpe14g00297 Cpe-Chr14:1740110 Cpe18g00172 Cpe-Chr18:3313834 5.07E-25 dispersed
Cpe01g00447 Cpe-Chr1:2584392 Cpe14g00297 Cpe-Chr14:1740110 1.21E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g409 . Blo15g00744 Bda06g01068 . Bpe07g00380 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1177 Cone10ag0984 . . . . . . . . . . . . . . . . . . . Cpe14g00297 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011811 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00297 Cpe_Chr14 FPKM 5.355209 5.073905 3.629351 4.930471 8.110501 7.130026 6.895115 5.225681 5.142729 4.877703