Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00299 ATGGAGTTGAAACCCGGATTATCGGCTTTGGTCACCGGCGGAGCTTCTGGAATTGGTAAAGCTCTCTGCCTAGCTCTGGGAGAGAAGGGAGTATTTGTGACTGTCGTTGATTTTTCTGAAGAAAAGGGTCAGGAAGTTGCATCCATTATCCAACAAAAAAATGCCAAGCTTCACCCTAAGTTAGAGGTTCCTCCTGCAATATTTGTAAGATGTGATGTTACCAACACAAGTAAAGCTCTCTGCCTAGCTCTGGGAGAGAAGGGAGTATTTGTGACTGTCGTTGATTTTTCTGAAGAAAAGGGTCAGGAAGTTGCATCCATTATCCAACAAAAAAATGCCAAGCTTCACCCTAAGTTAGAGGTTCCTCCTGCAATATTTGTAAGATGTGATGTTACCAACACAAATGACATACAGAAGGCTTTTGGCAAGCATTTAGCAACATATGGAGGATTAGATATCTGTATCAACAGTGCAGGAATTGGCAGCAAAATAGTATTTCATAATGATGAAACTGATGGTGCTCAAACATGGAGACGTGTTATTGATGTGAACCTAATTGGTGTCATGGCATGCACTCAACTTGCAATAAAGACCATGAAATCATTGGGAAAACCTGGTGTAATTATCAACCTAGGTTCTGCTTCAGGTCTTTATCCACTATTTGCAGACTCAGCATATACTGCATCCAAAGGTGGTGTTGTTATGTTTACCAGATCACTTGTGCCTTTCAAACGCAAGGGAATTCGAATCAATGTGCTTTGTCCTGAGTTTGTTAAAACAGAGCTGGCCTCAACAGCAATAGGTGAAAAGTTTGCTGAACGATCGGGAGGTTATGTTCCCATGGAAATGGTTATTAAAGGTGCGTTTGAACTAATCACTGATGAGAGCAAAGCTGGTTCATGCCTGTGGATTACAAATCGCAGAGGGATGGAGTACTGGCCCACCCCTACAGAAGAAGCAAAATACTTGCTTCCTTCCTCGAGTTCAAGAAAAAGATCTTCATCGACATTTTTTCAGAAAATTGATGTTCCCCAAAGTTGTGAGAAAGTAGTTGTTCATACTCTGAGCCACAATTTTCGTGGAGCAACTAGCATCGTGCGTGCACCATTGAGACTACCCATTAGACCAGATCATGTTCTCGTGAAAATCATATATGCTGGCGTAAATGCAAGTGATGTAAATTTCAGCTCAGGTCATTATTTCGGTAGCAGCAACCAAGATCTTCATTCTCTCCTTCCATTAGATGCAGGATTTGAGGGCGTGGGTATAATTGCAGCAGTTGGTGATTCTGTCACTCACCTGAAAGTTGGAACTCCTGCCGCAATGATGACATTTGGAAGTTATGCAGAGTTCGTCACAATACATTCAAAACATGTCCTTCCTGTTGCAAGACCTGATCCAGAAGTTGTTGCCATGCTGACTTCAGGACTAACGGCATCAATTGCTCTTCAAAAGGCAGGGCAAATGGAATCTGGAAAGGTTGTTCTTGTTACTGCTGCTGCTGGAGGAACTGGGCAATTCGCTGTCCAGCTTGCCAAGTTAGCTGGAAATAAGGTTGTTGCAACATGTGGAGGTAAGGACAAGGCCACGCTTTTGAAAGAATTGGGAGTTGATCGAGTTATAGATTACAGATCTGAAGACATTAAAACTTTCTTAGTTCGCCAGGTTCTAAAGACGGAGTATCCTAAAGGCGTTGATATCATCTATGAGTCAGTTGGAGGCGATATGTTTAGTTTGTGTCTGAATGCATTGGCTACCTATGGACGACTAATTGTGATCGGAATGATCTCACAGTATCAAGGAGAACACGGGTGGGAGCCATCAAATTACCCAGGACTCTGCGAGAAAATTCTAAAAAAGAGCCAAACTATTGCTGGGTTCTTCCTCATACAATATGCTAACCTCTGGCAGCAACATTTGGATAAGCTATTTCATCTCTTCTCCTCAGGCAAGCTGAAGGTTCGTGTGGATCCAAAAAGATTTTTAGGCGTGCAATCCGTTGTGGACGCCGTTGAATATCTGCATTCAGGCAAAAGTGTTGGCAAGGTTGTTGTTTGCATTGATCCAACCTTCATCGAACACAAATCAAAGCTCTGA 2097 42.58 MELKPGLSALVTGGASGIGKALCLALGEKGVFVTVVDFSEEKGQEVASIIQQKNAKLHPKLEVPPAIFVRCDVTNTSKALCLALGEKGVFVTVVDFSEEKGQEVASIIQQKNAKLHPKLEVPPAIFVRCDVTNTNDIQKAFGKHLATYGGLDICINSAGIGSKIVFHNDETDGAQTWRRVIDVNLIGVMACTQLAIKTMKSLGKPGVIINLGSASGLYPLFADSAYTASKGGVVMFTRSLVPFKRKGIRINVLCPEFVKTELASTAIGEKFAERSGGYVPMEMVIKGAFELITDESKAGSCLWITNRRGMEYWPTPTEEAKYLLPSSSSRKRSSSTFFQKIDVPQSCEKVVVHTLSHNFRGATSIVRAPLRLPIRPDHVLVKIIYAGVNASDVNFSSGHYFGSSNQDLHSLLPLDAGFEGVGIIAAVGDSVTHLKVGTPAAMMTFGSYAEFVTIHSKHVLPVARPDPEVVAMLTSGLTASIALQKAGQMESGKVVLVTAAAGGTGQFAVQLAKLAGNKVVATCGGKDKATLLKELGVDRVIDYRSEDIKTFLVRQVLKTEYPKGVDIIYESVGGDMFSLCLNALATYGRLIVIGMISQYQGEHGWEPSNYPGLCEKILKKSQTIAGFFLIQYANLWQQHLDKLFHLFSSGKLKVRVDPKRFLGVQSVVDAVEYLHSGKSVGKVVVCIDPTFIEHKSKL 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1752913 1763678 + Cp4.1LG14g04290.1 Cpe14g00299 480683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00299 698 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 492 513 IPR002364 GO:0008270|GO:0016491
Cpe14g00299 698 Gene3D - 471 654 - -
Cpe14g00299 698 SMART PKS_ER_names_mod 361 685 IPR020843 GO:0016491
Cpe14g00299 698 PANTHER BNAA08G02470D PROTEIN 151 698 - -
Cpe14g00299 698 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 151 698 - -
Cpe14g00299 698 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Cpe14g00299 698 PRINTS Glucose/ribitol dehydrogenase family signature 226 245 IPR002347 -
Cpe14g00299 698 PRINTS Glucose/ribitol dehydrogenase family signature 246 263 IPR002347 -
Cpe14g00299 698 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 76 IPR036291 -
Cpe14g00299 698 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 78 316 IPR036291 -
Cpe14g00299 698 SUPERFAMILY GroES-like 357 496 IPR011032 -
Cpe14g00299 698 Pfam short chain dehydrogenase 9 75 IPR002347 -
Cpe14g00299 698 Pfam short chain dehydrogenase 78 265 IPR002347 -
Cpe14g00299 698 Gene3D - 352 685 - -
Cpe14g00299 698 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 468 651 IPR036291 -
Cpe14g00299 698 Pfam Alcohol dehydrogenase GroES-like domain 376 442 IPR013154 -
Cpe14g00299 698 Gene3D - 78 324 - -
Cpe14g00299 698 CDD Mgc45594_like 348 686 - -
Cpe14g00299 698 Pfam Zinc-binding dehydrogenase 503 641 IPR013149 -
Cpe14g00299 698 Gene3D - 6 77 - -
Cpe14g00299 698 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 226 245 IPR002347 -
Cpe14g00299 698 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 160 IPR002347 -
Cpe14g00299 698 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 214 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00299 - - - csv:101217275 1105.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00449 Cpe14g00299 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00743 Cpe-Chr5:4556602 Cpe14g00299 Cpe-Chr14:1752913 3.31E-15 dispersed
Cpe13g01026 Cpe-Chr13:8445463 Cpe14g00299 Cpe-Chr14:1752913 5.29E-22 dispersed
Cpe14g00299 Cpe-Chr14:1752913 Cpe15g00283 Cpe-Chr15:3113799 6.44E-19 dispersed
Cpe20g00778 Cpe-Chr20:6975385 Cpe14g00299 Cpe-Chr14:1752913 1.43E-08 dispersed
Cpe07g00783 Cpe-Chr7:6956318 Cpe14g00299 Cpe-Chr14:1752913 9.20E-12 transposed
Cpe01g00449 Cpe-Chr1:2592785 Cpe14g00299 Cpe-Chr14:1752913 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g430 . Blo15g00737 Bda06g01055 . Bpe07g00392 . . Bma12g00464 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1101 Cone8ag1142 . . . . . . . . . . . . . . . . . . . . . Cpe14g00299 Cpe01g00449 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007124 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00299 Cpe_Chr14 FPKM 3.849315 4.549796 3.945576 2.441097 4.957559 3.621934 2.997547 15.7914 18.3503 24.049252