Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00302 ATGTCGTTTCGAAGCATTGTTCGTGATGTTAGGGATAGCATTGGGAGCTTATCTAGACGAGGTTTCGAGGTCAAGTTGAGTGGTCATCATAGAGGGAAGTCGAATGCGTCGTCGTTAAATGATGTTCATGATCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAATCTTCCACCCGAGCTGTTGTATGATGTCGTTCGAAGACTTGAAGAGAGTGAATGTACATGGCCTTCACGAAAGAACGTCGTGGCCTGTGCTGCGGTGTGTCGTTCTTGGAGAATTATGTGTATGGAGATCGTTAAAGGCCCGGAAGTTTGTGGGAAGCTTACGTTTCCTGTGTCACTGAAGCAGCCCGGACCGCGCGATGGATCCGTACAATGCTTCATTAAGAGGGACAAATCGAACCTAACATACCATCTCTACTTGTGTCTTAGCCCTGCTCTTCTGGTTGAAAATGGGAAGTTTCTTCTCTCTGCTAAGCGTACACGAAGAACGACTAGCACGGAGTATATTATCTCGATGGATGCAGAAAACATTTCAAGATCGAGTAGCTCGTACATCGGAAAGCTGAGGTCGAATTTTCTTGGAACGAAATTCATTGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCTTCCGGGGAAAACTAGCCGAAGATTCTATTCGAAAAAAGTGTCACCGAAAGTCCCGACTGGGAGTTACAACATAGCTCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCGATACCAGTGTCTTCCCTCGATGCAGGGGGCGTTGTTCCAGGCCGACCTGAGCTCCTCCCTCCGAACTCTCTCGACGATTCGTTTCGGAGTGCGTCATTCTCAAAAGCCTTGGATCATTCCATGGAGTTTAGTAGTGCTAGATTCTCCGAAATTGGGCGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTACTAAAAAACAAGCCACCGAGATGGCACGAGCAGCTACAATGTTGGTGTCTGAACTTTCGTGGGCGGGTAACGGTTGCGTCGGTTAAGAATTTTCAGTTGATTGCAGCAATACAACCAGGTGCTGGCGCTCCAACCCCGTCGCAACCAGGGCCACCGGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGGAAAGACATGTTCACGATGGATTATCGATATCCGCTGTCTGCTTTTCAGGCTTTTGCAATATGCTTGAGTAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 48.25 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDVHDQPPVVQNGCWANLPPELLYDVVRRLEESECTWPSRKNVVACAAVCRSWRIMCMEIVKGPEVCGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPLPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGVVPGRPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPGAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1776558 1779106 - Cp4.1LG14g04040.1 Cpe14g00302 480686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00302 428 Pfam Tub family 115 423 IPR000007 -
Cpe14g00302 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Cpe14g00302 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cpe14g00302 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cpe14g00302 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cpe14g00302 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cpe14g00302 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cpe14g00302 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cpe14g00302 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cpe14g00302 428 PANTHER TUBBY-RELATED 1 428 - -
Cpe14g00302 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Cpe14g00302 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cpe14g00302 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
Cpe14g00302 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Cpe14g00302 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Cpe14g00302 428 SUPERFAMILY F-box domain 44 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02118 Cpe-Chr1:17906672 Cpe14g00302 Cpe-Chr14:1776558 0 dispersed
Cpe02g00859 Cpe-Chr2:5722716 Cpe14g00302 Cpe-Chr14:1776558 0 dispersed
Cpe12g00258 Cpe-Chr12:1722248 Cpe14g00302 Cpe-Chr14:1776558 2.14E-141 dispersed
Cpe13g00683 Cpe-Chr13:6388206 Cpe14g00302 Cpe-Chr14:1776558 0 dispersed
Cpe14g00302 Cpe-Chr14:1776558 Cpe14g00525 Cpe-Chr14:3322335 1.51E-163 dispersed
Cpe19g00814 Cpe-Chr19:6094376 Cpe14g00302 Cpe-Chr14:1776558 1.19E-145 dispersed
Cpe01g00454 Cpe-Chr1:2623952 Cpe14g00302 Cpe-Chr14:1776558 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50493 PF01167 Tub 3.80E-116 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00302 K19600 - csv:101216314 859.366