Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00327 ATGGGCAAAATACCATGTTCTTTTTGCCGGAGCAGTAGTCGTCGCCGCCCTAAGAAGGCGGCTCAGTCGTTACTGTCCCCATTGCCTCAGCCACCTTCGCAGACTGGCGTCTGCTCTCCTCCCATTAACAATAATGGCAGCGGCTTGGTCGGTAGTGGTGGTGGTGGGGCCATGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCTAGGCTGTGGATGCGTCTTGACAGGTGGGGGCAGACGGAGCTTATAGAGTGGGACAAGAGCGCCATAATCCGGCGTGCTGCAATTCCGGCCAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACAATCCTCTAACATACTCGCCAGGGAAAAGGCCATGGTCGTTAGTTTAGAATTCATAAAAGCTATAGTTACTGCTGAAGAAGTTCTACTACTTGACCCTCTTTGCCAAGAGGTTATTCCATTTGTGGATAAGCTAAGGAAGCTACTTGCTAAGATGAGTTCATCTCAAGTTGAAAATGATGTTAATGTTTCGAGAGGAGGAAAGCGGTTGCCAGTTTCCGAAGCTGTTGATGAGCAGTATGAGCTGCCGTTCGAGTTTCAAGTTCTTGAAATTGCATTGGAGGTTGTTTGCATATACTTAGATTCCACCGTGAAAGACCTTGAGAGAGATGCTTATCCAGTCCTGGACGAACTGGCTATGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACTCGTATTCTTGCACGCGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGACAATGAAGATATGGGACAACTATATTTGACAAGAAAATGGATACAGAATCAGCAGTCCGATGCTTCGCTGGGAGTAGTCGCTTCCAACAGCACCACTGCCACCGTTCCTCATCTGCGTCGACTTAGTTCCACCAGGAGCGGAAGTGCAGTAACCAGCAATCTTTCGGATGATAATGACGTAGAGGATCTGGAAATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTACGTCAACATTCAACTTGACAGTCAAAGAAATGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCTGTCGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTATATTGTACGAGACGAACGGGATATTCGAGTACTTTGTCGGAGGCGCTTCAGCAGGGTGTTTGTTGATTTTCCTGCTTATTTTTGGGTATGCAAGATGGAAGAAGCTTCTTGGTTCGTGA 1326 46.76 MGKIPCSFCRSSSRRRPKKAAQSLLSPLPQPPSQTGVCSPPINNNGSGLVGSGGGGAMGKVKKKAGGARLWMRLDRWGQTELIEWDKSAIIRRAAIPARDLRILGPVFSQSSNILAREKAMVVSLEFIKAIVTAEEVLLLDPLCQEVIPFVDKLRKLLAKMSSSQVENDVNVSRGGKRLPVSEAVDEQYELPFEFQVLEIALEVVCIYLDSTVKDLERDAYPVLDELAMNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMGQLYLTRKWIQNQQSDASLGVVASNSTTATVPHLRRLSSTRSGSAVTSNLSDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDSQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCILYETNGIFEYFVGGASAGCLLIFLLIFGYARWKKLLGS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 1953465 1958614 + Cp4.1LG14g03960.1 Cpe14g00327 480711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00327 441 CDD Mrs2_Mfm1p-like 71 438 IPR039204 -
Cpe14g00327 441 Gene3D Magnesium transport protein CorA, transmembrane region 145 372 - -
Cpe14g00327 441 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 377 430 IPR045863 -
Cpe14g00327 441 Gene3D - 58 142 - -
Cpe14g00327 441 Coils Coil 239 266 - -
Cpe14g00327 441 Pfam CorA-like Mg2+ transporter protein 243 432 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cpe14g00327 441 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 441 IPR039204 -
Cpe14g00327 441 MobiDBLite consensus disorder prediction 11 38 - -
Cpe14g00327 441 Gene3D Magnesium transport protein CorA, transmembrane region 379 439 - -
Cpe14g00327 441 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 441 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00327 K16075 MRS2, MFM1; magnesium transporter - csv:101203496 679.478
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00680 Cpe-Chr7:5527678 Cpe14g00327 Cpe-Chr14:1953465 5.00E-22 dispersed
Cpe14g00327 Cpe-Chr14:1953465 Cpe15g00049 Cpe-Chr15:327493 4.58E-85 dispersed
Cpe01g00485 Cpe-Chr1:2800338 Cpe14g00327 Cpe-Chr14:1953465 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g00907 CST 1 447 MRS2 Gene Family AT1G16010 84.1 3.4e-205 711.4
Cpe02g01612 CST 1 448 MRS2 Gene Family AT1G16010 83.3 2.4e-203 705.3
Cpe07g00089 . 8 381 MRS2 Gene Family AT1G16010 53.7 3.8e-111 399.1
Cpe12g00161 CST 1 366 MRS2 Gene Family AT5G64560 79.3 8.6e-157 550.4
Cpe17g00172 CST 1 423 MRS2 Gene Family AT5G64560 62.4 1.3e-133 473.4
Cpe15g00049 . 1 374 MRS2 Gene Family AT5G64560 68.1 9.9e-129 457.2
Cpe04g00333 . 39 498 MRS2 Gene Family AT3G19640 64.4 1.0e-149 527.3
Cpe01g00485 . 1 453 MRS2 Gene Family AT3G58970 63.1 2.3e-145 512.7
Cpe14g00327 . 1 441 MRS2 Gene Family AT3G58970 63.9 5.0e-140 495.0
Cpe07g00089 . 9 381 MRS2 Gene Family AT2G03620 66.6 9.7e-133 470.7
Cpe03g00907 CST 13 447 MRS2 Gene Family AT2G03620 53.7 2.2e-113 406.4
Cpe02g01612 CST 13 448 MRS2 Gene Family AT2G03620 52.9 2.9e-113 406.0
Cpe14g00327 . 56 440 MRS2 Gene Family AT4G28580 50.4 2.6e-90 329.7
Cpe01g00485 . 61 452 MRS2 Gene Family AT4G28580 50.1 4.4e-90 328.9
Cpe12g00161 CST 1 328 MRS2 Gene Family AT5G09690 74.9 1.3e-126 449.9
Cpe15g00049 . 1 336 MRS2 Gene Family AT5G09690 64.6 1.1e-107 387.1
Cpe17g00172 CST 1 385 MRS2 Gene Family AT5G09690 60.4 1.5e-106 383.3
Cpe03g00907 CST 40 383 MRS2 Gene Family AT5G09690 50.9 6.8e-78 288.1
Cpe12g00161 CST 23 288 MRS2 Gene Family AT5G09720 66.8 4.3e-87 318.5
Cpe17g00172 CST 23 255 MRS2 Gene Family AT5G09720 63.6 4.0e-77 285.4
Cpe15g00049 . 38 296 MRS2 Gene Family AT5G09720 61.3 6.4e-75 278.1
Cpe03g00907 CST 1 447 MRS2 Gene Family AT1G80900 82.6 7.4e-200 693.7
Cpe02g01612 CST 1 448 MRS2 Gene Family AT1G80900 81.9 4.1e-198 688.0
Cpe07g00089 . 5 381 MRS2 Gene Family AT1G80900 54.4 2.1e-109 393.3
Cpe07g00680 . 114 481 MRS2 Gene Family AT5G22830 75.5 6.8e-148 521.2
Cpe20g00717 . 114 458 MRS2 Gene Family AT5G22830 69.3 1.3e-122 437.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00327 Cpe_Chr14 FPKM 48.767838 52.879147 55.552822 52.05405 84.012466 84.347427 82.617233 66.75061 60.941563 62.070683