Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00336 ATGGGAACAGAGGCGCTACCGAGCTCGAAAATGGAGGCTCAAAACGCACCATTGTTGCAGCACCTTCGTCATGCCGGCGAAGAAGAGGCTAAGGGGAGAGTCCGGTGGTGGAACAGAGTCATTGATGTTGACGAGGCCAAGACCCAGTTCTTGTTTTCGCTTCCCATGATTGTTACTAATGCTTTCTATTACTTAATACCTTTAATTTCCGCCATGTTCGCCGGTCATCTTGGTGACCTCGAGCTCGCCGGTGCAACTCTTGGCAACTCCTGGGCCACCGTCTCTGGATTTGCTTTCATGATTGGACTTAGTGGAGCACTAGAGACACTTTGTGGCCAAGCGTTTGGTGCCAAACAATATGGGAAGCTGGGCTTGTATCTGCAAGCCTCTTGCATTGTGTCTTTGTTCTTCTTTGTTATCCTATCTGTCTTATGGTACTACACCGAGTCTCTCCTTATTTTACTCCATCAAGACCCTGCCATATCAAAACTTGCTGCTACCTATGTCAAGTTTCTAATTCCAGGCTTATTTGCTCATGGACTTCTGCAGAACCTTCTGAGATTTCTTCAAACTCAGTCTATTGTTGAGCCCTTGGTTGTCTTCTCAGCTGTGCCTATGTTCGTCCACATTTGTATAGCATATGCTTTGGTGAATTGGACGTGTCTTGGAATCAGGGGACCTGCCTTGGCAGGTTCCATTTCCTTGTGGATATCTTGCTTGATGTTGGGGACATATATGTTTAAGACAAACAAGTTTGAGCAAACATGGGAAGGATTTTCGTCTGAATCTTTGAGCTACTTTCTCATGACGCTCGAACTAGCCATCCCTTTGGAGTACTGGGCCTTTGAAATTTTGGTGTTCTTAGCTGGAGTGATGCCAGACTCAGAAATAACTACCTCACTAATTGCAATCGACAATACCGAATGTATCGCCTTCACAATCACGTACGGCCTAAGTGCTGCTACAAGCACAAGGGTGGCGAACGAGCTCGGAGCAGGCAATTCTAGCAAAGCTAAGAGAGCTATGTTCGTGTCTCTTAAGCTATCTCTTCTCCTCACGCTCGTGGTTCTTCTAGCGTTAGGATTTGGGCATAGTATCTGGTCTAGCTTCTTCAGTAATAGTCCTAAGATAGAGAAGGAATTTGCTTCAATGGTCCCTTTTCTTCTGGTGTCAATACTCTTGGATTCAGTACAAGGAGTGGTATCAGGCGCGGCAAGGGGCTGTGGCTGGCAGCATTTGGCTACTTACATAAGCCTCCCGACGTTCTACGTCGTCGGGCTCACGACGTCGGCCGTTCTTGGTTTTCATTCGAAGCTATACGCCAAGGGCTTATGGATTGGCTTAACTTGTGGCCTTGCCTGCCAAACTATTGCCCTTTTGCTGCTAACATTTAGAGGAAAGTGGGAAGGAATAGATAAGATGGAAGATCGCAGAGAGCCATTGTTGGAGCTTGGTTTCGAAGCAAAACAATGGAGATGGTGGAAGAGAGGGTTGGATATGGAGGAAGCAAAGCTTCAACTTCTATTTTCACTTCCGTTGATTCTTACAAATGTATTCTATTACATGATATCTCTCGTCTCTGTTATGTTTGCTGGTCACCTTGGTGAGCTCGAGCTTGCTGCTGCTACTCTTGCTAGTACTCTGGCTAGCGTCACTGGCTTCGCTTTCATGACGGGACTGAGCGGCGCACTCGAAACGCTTTGTGGGCAAGCATTTGGCAGGAAGCTTTATGGGAAGATGGGGTTGTATCTTCAAGGCTCTTGTACCTTATCATTTTTCTGTTCCATCATTGTTTCAGTGTTGTGGATTTACACCGAACGTATTCTAGTCTTGCTCCATCAAGAACCAGAGATTTCGAGGAGATCTGCAACGTATATGAAGTTTCTCATCCCAGGATTATTTGCTTATGGCTTACTGCAGAACATCCTGAGGTTTCTTCAGACACAATCTGTTGTCATGCCTTTGATTTTCTTCTCTGCAGTGCCAATGCTCGTCCACGTAGCGATTGCATACGGTCTGGTTCACTGGACACGTCTCGGTTTCAACGGAGCTCCATTGGCCACATCGATCTCGTTATGGATGTCATGCCTGATCTTAGCTATATATGTACTTAAAGCAAAGAAGTTTGAGAAATCTTGGCAGGGCTTTTCATCAGAAGCTTTTACCTATAGTCTTTCAAGCTTAAAACTAGCTCTTCCATCTGCAGCAATGTTTGGAGTATTGGGCGGTCGAGATTATGGTGTTTTTAGCCGGGTTGATGCCGAACCCGGAAACAATGACAACACGGAAACCATTGCTTACATGATCACTTGTGGTCTCAGCGCTGCAGCAAGCACAAGGGTCTCAAATGAGCTGGGAGCAGGCAATCTTGACAGAGCCAGAACCGCCATGTTTGTAACTCTCAAACTTGCTGTCCTCGTCCCTCTGCTAGTTGTTTTGGCACTTGCCTTTGGCCAAAGCACCTGGGCTAGCTTCTTCAGCAACAGCGTTACAATAACGGACAGTTTCTCTTCCATGGTGCCGTTGCTCGCTATCTCGATAACGCTGGACTCGGTGCAAGGCGCCATATCAGGGGTGGCTAGAGGTTATGGTTGGCAGCACTTGGCTGTATACATAAACTTGTCCACGTTCTACTTTGTCGGTGTATCGATATCGATCCTTCTCGGGTTTAAGCTTAGATTATATGCTAAGGGTTTATGGATCGGATACATCAGTGGTCTCTCGTCGCAAACTGCTTGTCTTCTTTTTGCCGTTTTGTATGCAAAATCGATTAAAATGGATCCATCTGATAATGAATTGGCTACGGCTTCTCTAGCTTATGTGGACACCAAGGCTGCAAACAATACGAAGGCTCTTATGGCGGAGCTTTCCCGCCAATTCTACGGCCTCCGATTGGTTTCCCGCCCCGCCGGTAGCATTGCCATCAAGGTTCACGACCACTCCATTCCCAAGGGACAACACACAGTCGCTTTGTCACATTCCGGTGTTAAGAAGGAGAGAATGGTAGCGGAGGACACCAGCATGTTATCTTATGGTGATCCTTTTGGGAGAATCAAAGGAATTTCAAGCAAAATTTCTGTGAAGGCTGGGACTCAAGGTTTAGATAATGAAAACAAACCATTGCCACGTTGCATAGTTCTTGATATCGAAGGGACTACTACTCCAATATCTTTTGTTACTGACGTACTCTTTCCATATGCTCGTGATAGTGTTGGAAAGCATTTGCTTTTAACGTATGAAACTGCAGAAACTCAAGATGACATTAAGTTATTGCGTTCACAAGTTGAAGAAGATTTGGAAAAAGGTGTTGCTGGAGCTGTGCCCATCCCTCCTGATAATGCTGGGAAAGAGGAAGTCATTGCAGCATTGGTTGCTAATGTTGAAGCAATGATAAAAGCTGACCGCAAGATAACTGCCTTGAAACAATTGCAAGGTCACATATGGAGAACAGGATTTTCAGGGAATGAATTGGAGGGAATAGTTTTTGACGATGTGCCAGAGGCTCTTGAGAGATGGCATGCTTTGGGCATTAAGGTCTACATATACTCGAGCGGAAGCAGGTTGGCACAAAGGCTTATATTCGGAAAGACTAATTATGGTGATCTAAGAAAATACTTATCAGGATTCTTTGACACTGCTGTGGGGAACAAAAGAGAAATAAGGAGTTATGTTGAGATTTCAGAGTCTCTTGGTGTTGATACACCATCAGAGATCCTGTTCATCACAGATGTCTATCAGGAAGCTGTAGCAGCAAAAGCAGCAGGGCTGCAGGTGGCCATCTCAATCCGACCAGGAAATGGTCCACTGCCTGATGATCATGGGTTCCAGACTGCCACTTCCTTCTCAGACATCACAGCTTGA 3861 45.77 MGTEALPSSKMEAQNAPLLQHLRHAGEEEAKGRVRWWNRVIDVDEAKTQFLFSLPMIVTNAFYYLIPLISAMFAGHLGDLELAGATLGNSWATVSGFAFMIGLSGALETLCGQAFGAKQYGKLGLYLQASCIVSLFFFVILSVLWYYTESLLILLHQDPAISKLAATYVKFLIPGLFAHGLLQNLLRFLQTQSIVEPLVVFSAVPMFVHICIAYALVNWTCLGIRGPALAGSISLWISCLMLGTYMFKTNKFEQTWEGFSSESLSYFLMTLELAIPLEYWAFEILVFLAGVMPDSEITTSLIAIDNTECIAFTITYGLSAATSTRVANELGAGNSSKAKRAMFVSLKLSLLLTLVVLLALGFGHSIWSSFFSNSPKIEKEFASMVPFLLVSILLDSVQGVVSGAARGCGWQHLATYISLPTFYVVGLTTSAVLGFHSKLYAKGLWIGLTCGLACQTIALLLLTFRGKWEGIDKMEDRREPLLELGFEAKQWRWWKRGLDMEEAKLQLLFSLPLILTNVFYYMISLVSVMFAGHLGELELAAATLASTLASVTGFAFMTGLSGALETLCGQAFGRKLYGKMGLYLQGSCTLSFFCSIIVSVLWIYTERILVLLHQEPEISRRSATYMKFLIPGLFAYGLLQNILRFLQTQSVVMPLIFFSAVPMLVHVAIAYGLVHWTRLGFNGAPLATSISLWMSCLILAIYVLKAKKFEKSWQGFSSEAFTYSLSSLKLALPSAAMFGVLGGRDYGVFSRVDAEPGNNDNTETIAYMITCGLSAAASTRVSNELGAGNLDRARTAMFVTLKLAVLVPLLVVLALAFGQSTWASFFSNSVTITDSFSSMVPLLAISITLDSVQGAISGVARGYGWQHLAVYINLSTFYFVGVSISILLGFKLRLYAKGLWIGYISGLSSQTACLLFAVLYAKSIKMDPSDNELATASLAYVDTKAANNTKALMAELSRQFYGLRLVSRPAGSIAIKVHDHSIPKGQHTVALSHSGVKKERMVAEDTSMLSYGDPFGRIKGISSKISVKAGTQGLDNENKPLPRCIVLDIEGTTTPISFVTDVLFPYARDSVGKHLLLTYETAETQDDIKLLRSQVEEDLEKGVAGAVPIPPDNAGKEEVIAALVANVEAMIKADRKITALKQLQGHIWRTGFSGNELEGIVFDDVPEALERWHALGIKVYIYSSGSRLAQRLIFGKTNYGDLRKYLSGFFDTAVGNKREIRSYVEISESLGVDTPSEILFITDVYQEAVAAKAAGLQVAISIRPGNGPLPDDHGFQTATSFSDITA 1286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2038798 2053482 - Cp4.1LG14g03820.1 Cpe14g00336 480720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00336 1286 TIGRFAM matE: MATE efflux family protein 512 900 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe14g00336 1286 TIGRFAM matE: MATE efflux family protein 55 445 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe14g00336 1286 Pfam MatE 762 885 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe14g00336 1286 Pfam MatE 55 214 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe14g00336 1286 Pfam MatE 512 671 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe14g00336 1286 Pfam MatE 277 428 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cpe14g00336 1286 CDD MATE_eukaryotic 502 919 IPR045069 GO:0042910|GO:1990961
Cpe14g00336 1286 CDD MATE_eukaryotic 45 469 IPR045069 GO:0042910|GO:1990961
Cpe14g00336 1286 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 1043 1283 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cpe14g00336 1286 Gene3D - 1056 1152 - -
Cpe14g00336 1286 PANTHER MULTIDRUG RESISTANCE PROTEIN 762 931 - -
Cpe14g00336 1286 CDD HAD_EP 1044 1265 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cpe14g00336 1286 PANTHER PROTEIN DETOXIFICATION 25 468 - -
Cpe14g00336 1286 SFLD enolase-phosphatase 1043 1284 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cpe14g00336 1286 PANTHER MULTIDRUG RESISTANCE PROTEIN 492 738 - -
Cpe14g00336 1286 PANTHER PROTEIN DETOXIFICATION 762 931 - -
Cpe14g00336 1286 SFLD Haloacid Dehalogenase 1043 1284 - -
Cpe14g00336 1286 PANTHER MULTIDRUG RESISTANCE PROTEIN 25 468 - -
Cpe14g00336 1286 PANTHER PROTEIN DETOXIFICATION 492 738 - -
Cpe14g00336 1286 Gene3D - 1153 1284 IPR023214 -
Cpe14g00336 1286 SUPERFAMILY HAD-like 1042 1284 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00336 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - cit:102608545 597.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00698 Cpe14g00336 CCT
Cpe02g00698 Cpe14g00336 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00698 Cpe-Chr2:4407872 Cpe14g00336 Cpe-Chr14:2038798 3.84E-16 dispersed
Cpe06g00682 Cpe-Chr6:4234428 Cpe14g00336 Cpe-Chr14:2038798 2.04E-146 dispersed
Cpe14g00336 Cpe-Chr14:2038798 Cpe18g00689 Cpe-Chr18:6869112 2.98E-72 dispersed
Cpe14g00336 Cpe-Chr14:2038798 Cpe04g01386 Cpe-Chr4:11213709 2.09E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g201 . . . . Bpe09g00237 . . Bma13g00947 Cmo16g00433 . Cma01g01212 . Car01g01036 . Sed04g2403 . Cpe02g00698 Bhi09g03436 Tan01g0815 . . Hepe01g1391 . . Cla11g01757 Cam11g1824 Cec11g1844 Cco11g1851 Clacu11g1984 Cmu11g1794 Cre11g2201 Cone6ag0152 Cone9ag0177 . Cone15ag1052 Lsi04g02067 Csa04g02338 Chy07g00069 . . Blo10g00760 . Bda12g00837 . . . . . Cmo01g01266 . . Cma16g00399 . Car16g00364 Cpe14g00336 . . . . . . . . . . . . . . . . . Chy06g01160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00336 Cpe_Chr14 FPKM 5.335386 4.846188 2.949669 2.484935 11.376965 0.0 8.143707 1.702498 1.511769 2.222489