Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00341 ATGCGAGTTTCATCGGGTTCAGTTTCGTCGTCATTGAAGCAGAGTGACAATCGGTCTGGGTCTAGGCTTAAGAAGAAGCACAAAAGGCTTGATGCCATATGCGAAAAAGAGTATAGTCGAAACCATGGCGATGTGAATGAGAATGGCAGTGGGTTGGGGATTGTGGAGGCTGACCTTGGGCTTCGGCGGAGCAGCCGTGTCCGTCGGGCCCCAGTCTTGCTCGATGCTTCCCCTATGCCAAAGAAGAAGCGGCGGAAGGTTCATGGGAATGAAACTTTGGGCGTTAAAACGAGTGCTAACTCTCTGCCTCAGTTGAGTGATGAATTGAATGATGAGAAGCCCGACAATTGGAGATCAAGGTTGAGATCAGGGAACAGAAATTTGGGGATTAGAGTGGAAAAAGGAACTCGGGCAAGCAGGAAAAGAAAACTTTTTGATGAAATTGTTGATGTGGAAGTAAAAAGTAGTGGAATGAGGAGGTTTGGAGTGACAAATGATCAAATTAACATAGAAAAAGAGGTGAAATCTCCTAAAATTAAGGATGGTTGTTGCAGGGAAGACATCTTGGATATCGATAATGAAGATGATGATGAGGAGGAGACTGAGGAGTGGGAGGAAGAAGAAGAAGAAGTAGAAGAAGAAGGGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGGAAGAAAAAGAAGGGGGGGAGGAGGAGGAGGAGGAGGTGGTGGAGGGAAAGGAAGCCATGACTGCAAAGAATGAGAGAGAGGACGTTTTGCCTTTGGAAAATGAAATGGATGACAAAAATGTGAAAGCAGTGGATGATGTTATTCCTGAGGTTGTTCAAAAATTGGACAAAGAAACTTCGAGTTCTTTTCATGTAGATGAGGCTTGTAGCGTCGATCACAATGAAGAACCAGCCAATGTGGTGGAGAATTCAAACAACGGTGAGATACCGCTGGAAGAATTAACACGACTAAATGAAGGCATAAATGAAATTCATGATGTAGAAGCTGCTGTAGTTTCAACAAATGAAGTGGTAGGTGGAAGGCGTTGCGATGAGAAAGCTATTGATTTGGGCAAGTTTACTGAAAAGTCTAAGCAACATAGTGGTGATTTAAATTTAAAGAAGTTTACAGACAGTTCCACAGGTATGTTGGGTAAGGCTCGCATTAAAGAGGGCAGAAGGTGTGGATTGTGTGGAGGAGGAATTGATGGTAAACCGCCAAAGAAGTCAGTTCAGGATTCGGGTGAGAGTGAAAATGAAGCTTGTAGTGGCTCTTCAGCTTCAGAGGAACCAAATTATGACAAGTGGGATGGTTTTGGTGATGAACCTGGATGGCTTGGACGCCTATTAGGTCCTATTAATGATCGTTATGGCATTGCTGGAATATGGGTCCATCAACACTGTGCAGTTTGGAGCCCCGAGGTTTATTTTGCTGGATTGGGATGCTTGAAAAATGTAAGGGCTGCTCTTTGCAGGGGAAGAGCATTAAAGTGCACTCGGTGTGGGAGACCTGGCGCAACCATCGGATGTCGTGTTGATCGATGCCCAAGAACTTACCACTTGCCTTGTGCACGTGCTAATGGTTGCATATTTGATCACCGGAAATTTCTCATAGCTTGCACAGATCATCGCCACATCTTCCAACCTCATGGAAATCAATATTTAGCTCGGATAAAGAGATTGAAGGCCAGGAAAATGAAACTGGAAATAAAAAAGCAATCAAATGATGCTTGGCGAAGGGATATTGAGGCTGAAGAAAAGTGGTTGGAGAATTGCGGGGAGGATGAAGAGTTTTTGAAAAGAGAGAGTAAGAGACTTCATCGAGATTTGGTGAGAATTGCACCTGTATATATTGGTGGCTCAAACTCAGAAGGAGAGAACTTATATCGTGGTTGGGAGTCTGTTGCTGGGCTTCAAGGTGTCATCCAATGTATGAAAGAAGTAGTATTCTTACCACTCTTGTATCCTGAGCTTTTCGATCGCTTTGGGATTACACCTCCTAGAGGTGTTCTGTTGCATGGATATCCTGGAACTGGTAAAACACACGTTGTGCGAGCACTAATAGGTTCTTGTGCTCGTGGTGATAAACGAATTGCATATTTTGCTCGTAAAGGAGCTGATTGCTTAGGGAAATATGTTGGTGATGCAGAACGTCAGTTAAGACTTCTATTTCAAGTTGCAGAGAAATGCCAACCTTCTATTATATTTTTTGATGAGATAGATGGGTTGGCACCTTGTCGCACAAGGCAGCAAGATCAAACCCATAATTCAGTTGTGTCTACATTACTTGCACTATTAGATGGTCTAAAATCTCGGGGGTCTGTCGTAGTTATTGGTGCAACAAATCGCCCTGAGGCAGTTGATCCAGCATTAAGGAGGCCTGGGAGGTTTGACCGTGAGATTTATTTTCCTTTGCCATCGGTTGAGGATAGGGCTGCTATTCTCTCCCTTCACACTCAAAGGTGGCCAAAGCCAGTTGAGGGACCCTTGCTCCAGTGGATTGCAAGAAGGACTGCAGGCTTTGCTGGTGCTGATCTTCAGGCTCTCTGTACTCAAGCAGCAATGAGTGCTTTGAAAAGAAATTTTCCTCTTAAAAAAGTTCTATCAGCTTCTGGGGAACAAGCTTCAAGAGATAACTGCCCTCCTCTTCCTTCCATTTTAGTGGAGGAGCGGGATTGGTTAGAAGCTCTATTATATTCTCCACCTCCATGCTCACGTAGAGAAGCAGGGATGGCTGCTAATGATGTGGCATCCTCTCCTCTTCCCTCTCATCTCATTCCTTGTCTGCTTCAACCACTGTCAACTTTACTTGTTTCCCTTTATCTTGATGAACGCATCAGCTTGCCGGCTAATCTTTTAAAAGCTGCAACTTTAATTAAAAGCGTGATTGTTACTGCTTTGGATGGAAGGAAAATTGTCACTAGTTGCTGGTGGTCTTATGTTCACGATTTTCTTCAGGATGCTGATATTGCAAATGAGATAGAGATAAAGCTGCAGGGTTCTGGAGTGTTACTTGAGGATTCTACTTTTGTTGGTTCTGGTGTTCTCAACAATGAAACAGGCAATGATAGTTCCAAGTTTGAAAGTGTAGGTCACCGTGGTGGCCCACCCACTACTATGGTAGAGTCACCATTCACCTTGGAAAATAAGTCTGGCTTCCGTATTTTGATTGCTGGGAATCCCAGATCTGGACCAAGGCATCTTGCTTCTTGTCTTCTTCACTGTTATATTCAACATGTTGAAATTCGTAAGGTTGATATAGCTACAATTTCACAAGAAGGTCATGGTGATTTGGTGCAAGGCATATCACAAATATTATGCCATGATCTTGTTGCTTTAGTCTTAAGTTACGGGGAATCCGTCATGTACCTTCTGATGTTACTTGTCATGATATTGATGGTCCTGTTTCAAACTTTGATGCATGACATGTTGTGCTTTATAGTATTTGATTATTATGTGCATTACATTGGCTGCCTATGGTATTTAAAAATTATTTACACTACAGTGAATTGCTCTAGCATGGGATCGTGCCTTTTGTTCATGCCAAGAATTGATTTGTGGGCTATTGAATCACAAAATCAAACATCTGAGGAGTGCGGTTTCTTTCTGAATGAGGAACAGTACCCCAAGGATGGAATTATTGTCAAAGATGGTCTCCTTGGTGGAAGGGAAAACCATAGTTATTCAGACCAAAGCAAATCAACCAAGAGGACCGTATTTCAAGACGAATCTCTCTCTAGTGCTTCATATGCTTGGAGTTCATTTGTTGAGCAAGTTGAATCTCTATCTACACCCTTGATGATTTTGGCCACATCAGAAGTTCCATTTTTGCTACTTCCACAAGAGATAAGGCGGTTCTTCAGGAATGACTTGTCAATTTGTCGGCCAACTACTACAGAGCATTCAGTACCTAGATTCTCTGTGCAGATTGATGGAGGTTTTGACCATGACATGGTAATCAATCAGTCTGCTACAGAATTATCAAGGGACATACTGAAACTTCTTGTACATTTGATTCACCAAAAGTCCCACTCTAAAACATCTATTTGCACAAAGAACGAAATTTCTGTTACCCAAGATGAGAGTAATGCTGCAGATCAGCAAATAGATAAAGAAACTGCCAGCGAGCACACTGGAGAAAAGAAGTCCCCTGATGTGCCTTCTGTTAGAATTGTACCACTACCTGGCAGTAGAACCATGAGAGTGAAATCAAACTTGAGTTCAGTAATATCTACTTTTGGGTATCAAATTCTGCGATACCCCCATTTCGCCGAGCTCTGTTGGGTGACATCAAAATTGAAAGAAGGCCCCTCTGCAGATGTTAGTGGACCCTGGAAGGGATGGCCGTTCAATTCTTGTATCGTTCGCCCGATGAATGCTTTGGAGAAGGTAGCATCAAGCAGCACGAGTAATGGAAAATCTAAGGAAATTTCGGGTATGGTAAGAGGCTTGATTGCTGTTGGTTTATCAGCAATCAGAGGTGCCTACACATCATTAAGGAAAGTCTCCTTTGATGTGCGATTGGTACTCGACCTCTTAGTCGAACAGATAAATGCAAAAATTAATTCCGGGAAAGACCGGTATCAATATTTTCGCCTTCTATCACAAGTTGCGTACCTGGAAGATGTTGTTAATAGCTGGGTCTTCACTCTGCACAGCTTGGAACAGGACTCGAAAAAAATTGAAACATCAACGAATCATGCTTCTGGTGGTAATGAGATTTCGTGTGAGAAAAACGAACCCATTACATCCAACGAGGGCTGTCTTACACATGAAATTCCAGAAGTCAGTTGTCAGGAACCTGTTGATGAGGAAGAAGTTGTACGTATTGATTCCTTGGTAGATGGTGATTTGAATCAGTCTAATTCCCAGGATACAACATTCATATCAGGAGGACATGGAGATGGGAATTTCTGCAGTAAGTCAGTCTCTAACCAGTCCCATGACATTGCTGCTGACGATGACGACCAGTTAACAGATAATATTCCACTGAATGAGACGACTGTTCTTGCACCGGATGATTTGGAGGACAATAGAAACGACACATCGGTTAAAGCGCCTTTAAATTTAGGAACGGAATCAGTTTTCGAGTTGGAAGATCATCATCTTCATCATCAAAATTCAAGTGAGGTATGTGCTGATGAAATCCCTAGCTGCACAAAACCCTGCAACTATAGTAATGGGTGTTGCACCTTAGAAAATGGTTGCAAATGTGATGGTTGTAAGCCCGACACAGACACGAATGACCGTGAAGTGAATGTTCACTCATCTCCCAGCAGAAGTGACCTCTCAACTAGCTCTGCACAAGTATGTTCTATTCGGTGCTGCACTGGTTGTTTAAACATCCTCTACGGTGCAACAAGAACCATTCTTCAGAATGAACTTGGATCGAATTGGAATAATTGGACTGCGGAGGACGTTCATGACATTGTTGCAGCGCTCTCAGTCGACCTTCTTGCAGCAGTAAGACGGGCATTTCTTGATGGAAACGACACTCGTGTATTTAACGATAGACGAAAGGCCTCAGACTCGAGAACTTGTGATTGCAAAAGTTGGAAAGACATGGTTTTTACGGCAGTGGAATGTATTTGTCACTGTGAGAAGGAAAGTTGGAGTGAAAAGGTAAGTCCCTCTCCTTGTTCTGATATGGGGCTTGAAACGAACTTTATATTCAGAGATGGTGTATTGGTTAGCCAAGATCCCAATAGGAATGTTCCGTTTCATTGTAAATTGGAGACTTTGTGCCTCTGTTCTCTTACAGAGTTGATAGTAATGGCAAATGAGCCTTTTAATGGATAA 5835 42.76 MRVSSGSVSSSLKQSDNRSGSRLKKKHKRLDAICEKEYSRNHGDVNENGSGLGIVEADLGLRRSSRVRRAPVLLDASPMPKKKRRKVHGNETLGVKTSANSLPQLSDELNDEKPDNWRSRLRSGNRNLGIRVEKGTRASRKRKLFDEIVDVEVKSSGMRRFGVTNDQINIEKEVKSPKIKDGCCREDILDIDNEDDDEEETEEWEEEEEEVEEEGEEEEEEEEEEEEEEEEEEEEEEEEEEKEGGEEEEEEVVEGKEAMTAKNEREDVLPLENEMDDKNVKAVDDVIPEVVQKLDKETSSSFHVDEACSVDHNEEPANVVENSNNGEIPLEELTRLNEGINEIHDVEAAVVSTNEVVGGRRCDEKAIDLGKFTEKSKQHSGDLNLKKFTDSSTGMLGKARIKEGRRCGLCGGGIDGKPPKKSVQDSGESENEACSGSSASEEPNYDKWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRPGATIGCRVDRCPRTYHLPCARANGCIFDHRKFLIACTDHRHIFQPHGNQYLARIKRLKARKMKLEIKKQSNDAWRRDIEAEEKWLENCGEDEEFLKRESKRLHRDLVRIAPVYIGGSNSEGENLYRGWESVAGLQGVIQCMKEVVFLPLLYPELFDRFGITPPRGVLLHGYPGTGKTHVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHNSVVSTLLALLDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVEDRAAILSLHTQRWPKPVEGPLLQWIARRTAGFAGADLQALCTQAAMSALKRNFPLKKVLSASGEQASRDNCPPLPSILVEERDWLEALLYSPPPCSRREAGMAANDVASSPLPSHLIPCLLQPLSTLLVSLYLDERISLPANLLKAATLIKSVIVTALDGRKIVTSCWWSYVHDFLQDADIANEIEIKLQGSGVLLEDSTFVGSGVLNNETGNDSSKFESVGHRGGPPTTMVESPFTLENKSGFRILIAGNPRSGPRHLASCLLHCYIQHVEIRKVDIATISQEGHGDLVQGISQILCHDLVALVLSYGESVMYLLMLLVMILMVLFQTLMHDMLCFIVFDYYVHYIGCLWYLKIIYTTVNCSSMGSCLLFMPRIDLWAIESQNQTSEECGFFLNEEQYPKDGIIVKDGLLGGRENHSYSDQSKSTKRTVFQDESLSSASYAWSSFVEQVESLSTPLMILATSEVPFLLLPQEIRRFFRNDLSICRPTTTEHSVPRFSVQIDGGFDHDMVINQSATELSRDILKLLVHLIHQKSHSKTSICTKNEISVTQDESNAADQQIDKETASEHTGEKKSPDVPSVRIVPLPGSRTMRVKSNLSSVISTFGYQILRYPHFAELCWVTSKLKEGPSADVSGPWKGWPFNSCIVRPMNALEKVASSSTSNGKSKEISGMVRGLIAVGLSAIRGAYTSLRKVSFDVRLVLDLLVEQINAKINSGKDRYQYFRLLSQVAYLEDVVNSWVFTLHSLEQDSKKIETSTNHASGGNEISCEKNEPITSNEGCLTHEIPEVSCQEPVDEEEVVRIDSLVDGDLNQSNSQDTTFISGGHGDGNFCSKSVSNQSHDIAADDDDQLTDNIPLNETTVLAPDDLEDNRNDTSVKAPLNLGTESVFELEDHHLHHQNSSEVCADEIPSCTKPCNYSNGCCTLENGCKCDGCKPDTDTNDREVNVHSSPSRSDLSTSSAQVCSIRCCTGCLNILYGATRTILQNELGSNWNNWTAEDVHDIVAALSVDLLAAVRRAFLDGNDTRVFNDRRKASDSRTCDCKSWKDMVFTAVECICHCEKESWSEKVSPSPCSDMGLETNFIFRDGVLVSQDPNRNVPFHCKLETLCLCSLTELIVMANEPFNG 1944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2076510 2087211 + Cp4.1LG14g03760.1 Cpe14g00341 480725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00341 1944 ProSitePatterns AAA-protein family signature. 787 805 IPR003960 GO:0005524|GO:0016887
Cpe14g00341 1944 MobiDBLite consensus disorder prediction 93 107 - -
Cpe14g00341 1944 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 873 IPR027417 -
Cpe14g00341 1944 Gene3D - 818 910 - -
Cpe14g00341 1944 MobiDBLite consensus disorder prediction 418 446 - -
Cpe14g00341 1944 Pfam ATPase family associated with various cellular activities (AAA) 682 817 IPR003959 GO:0005524|GO:0016887
Cpe14g00341 1944 PANTHER AAA DOMAIN-CONTAINING 58 1938 IPR045199 -
Cpe14g00341 1944 MobiDBLite consensus disorder prediction 74 122 - -
Cpe14g00341 1944 MobiDBLite consensus disorder prediction 188 254 - -
Cpe14g00341 1944 Pfam AAA+ lid domain 843 875 IPR041569 -
Cpe14g00341 1944 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 58 1938 - -
Cpe14g00341 1944 MobiDBLite consensus disorder prediction 1372 1402 - -
Cpe14g00341 1944 MobiDBLite consensus disorder prediction 1 17 - -
Cpe14g00341 1944 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 458 558 IPR013083 -
Cpe14g00341 1944 Coils Coil 194 251 - -
Cpe14g00341 1944 SMART AAA_5 678 819 IPR003593 -
Cpe14g00341 1944 MobiDBLite consensus disorder prediction 1 30 - -
Cpe14g00341 1944 CDD AAA 678 817 - -
Cpe14g00341 1944 MobiDBLite consensus disorder prediction 255 277 - -
Cpe14g00341 1944 MobiDBLite consensus disorder prediction 1377 1396 - -
Cpe14g00341 1944 MobiDBLite consensus disorder prediction 307 326 - -
Cpe14g00341 1944 MobiDBLite consensus disorder prediction 181 277 - -
Cpe14g00341 1944 Pfam PHD-like zinc-binding domain 477 556 - -
Cpe14g00341 1944 Gene3D - 643 911 IPR027417 -
Cpe14g00341 1944 MobiDBLite consensus disorder prediction 428 442 - -
Cpe14g00341 1944 ProSiteProfiles Extended PHD (ePHD) domain profile. 436 556 IPR034732 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00341 - - - csv:101208571 1608.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00341 Cpe-Chr14:2076510 Cpe17g01096 Cpe-Chr17:8317677 3.51E-81 dispersed
Cpe19g01163 Cpe-Chr19:7791016 Cpe14g00341 Cpe-Chr14:2076510 1.98E-12 dispersed
Cpe14g00341 Cpe-Chr14:2076510 Cpe08g01089 Cpe-Chr8:8262831 4.16E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002378 1 1 1 1 1 2 1 2 3 1 2 2 1 1 3 1 2 2 1 2 3 3 2 2 7 2 1 5 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00341 Cpe_Chr14 FPKM 89.313881 97.141129 87.311729 84.018135 75.094742 72.748528 75.465591 102.06636 112.577118 109.16095