Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00343 ATGGACCCAATCAATGCCTCTCTTCAATCTTCTCCTTCAAGCGATGTCCCGCTCATTGATGAAGCTTTGGATCGTTTAGAGCTCTGTTGGTTCTTTGATAATCTCCTTACTTGGAGGAACCCCCGGATGTCTACCTCCCGTTCTGATCCTTGTCTTTCTAATGTTGCCCATCAGGTGTTTGATGAAAGTCCTGCTGCTAATCTCTGCTCATCTGATTTGGATGGGGATGTTTCGCTGCCTAATGGTGGTGGGGTGCGTCGGAATCTGCTTCGAACACCGTCGTTACCGTCACGTATGGATCTAGGAGGGGAGGGAATTCGAGAGAAAGGAAGTGGTTCTAGGCCATTGTTGGAGCATGATGTGCTTGTTGAAACTCCTGCTGATAATGTTTGCTCGTCTGCTTTGGATATGGATGTTTCGATTGGAAATGGTGGTGGTAAACATAGGAGTCTCCTTCGAACACCGTCGTTACAGTCCGAGGAAGGAATTCGAGATAAAGGAAGTGGTTCTAGGCCATTATCAGAGCATGATGTTCTTGTAGAAACGCCTGCTGATAATGTTTGCTCATCTTCTTTGGATATGAATGTTTCGATTGGAAATGGTGGTCGTAAACATAGGAGTCTCCTTCGGACACCGTCGTTACCGTCCCGTGTGGACCGAGAGGAAGGAATTCAAGAGAAAGGAAGTGGTTCTAGGTCATTAGCAGAGCATGATGTTCTTGTAGAAAGTCCTGCTGATAATGCCTGCTTATCTGCTATGGATATCAATGTTTCGCCGGGATATGGTGGTGGTAAATGTCGGAGTCTACTCCGGATGCCTTCGTTACCGTCCCGTGTGGAACGAGAACAAGGTATTCAAGAGAAAGGGAATGATTCCAAGCCATTAATAGAACATGGGTTGCTTCAAAAACCAGCCAAACCACCATATGTAGAGAGGAAAGAAGAGGGAACTCGCAGCAAAGAAAGTGGTAGCACTCGAAAGAGCAAATCCGCAAGGAAACCACGGAATGGCAATCTGCTAAGAACGCCATCTTTGCCACCATTTATAGGCAGAGAAAAGGAATTTGGAGAGAAGGAAGCTGCTGCTAGAATCAGAAACTCCATTCAACCGAACCTTTCTGAATTCTTTCCCACAAGACAAGAGATTCTTGAAAAGAACTTCAGCCTCCCGACGTGTCGAATCCCGACAAACAGCGACAGAATGTGGCACCAATTTCTCATCCAAATGAGGAAAAGAAGAAGCCAAAGTGAGCTTGAATCAGAAGAACTGCAAGGGTTCAAGGACTTGGGATTCACATTTGACAAAAAGGATATAAACCCAACAGTGGTTGACATAATTCCAGGGTTGAGAGAGAAAAAAGAGGAAGAATTAGACAGTGAAAGAACAAGAAGACCTTATCTTTCTGAAGCTTGGATGCTCCAAACTCATCTCCTCCCTCCCATACCAAAATGGGACAGTAGAAAATCTGCTGAAGACATGAAACAACAAATCAAGTTCTGGGCTAGAGCTGTTGCTTCCAATGTGCACTAA 1530 45.16 MDPINASLQSSPSSDVPLIDEALDRLELCWFFDNLLTWRNPRMSTSRSDPCLSNVAHQVFDESPAANLCSSDLDGDVSLPNGGGVRRNLLRTPSLPSRMDLGGEGIREKGSGSRPLLEHDVLVETPADNVCSSALDMDVSIGNGGGKHRSLLRTPSLQSEEGIRDKGSGSRPLSEHDVLVETPADNVCSSSLDMNVSIGNGGRKHRSLLRTPSLPSRVDREEGIQEKGSGSRSLAEHDVLVESPADNACLSAMDINVSPGYGGGKCRSLLRMPSLPSRVEREQGIQEKGNDSKPLIEHGLLQKPAKPPYVERKEEGTRSKESGSTRKSKSARKPRNGNLLRTPSLPPFIGREKEFGEKEAAARIRNSIQPNLSEFFPTRQEILEKNFSLPTCRIPTNSDRMWHQFLIQMRKRRSQSELESEELQGFKDLGFTFDKKDINPTVVDIIPGLREKKEEELDSERTRRPYLSEAWMLQTHLLPPIPKWDSRKSAEDMKQQIKFWARAVASNVH 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2097169 2099728 - Cp4.1LG14g03630.1 Cpe14g00343 480727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00343 509 MobiDBLite consensus disorder prediction 202 237 - -
Cpe14g00343 509 PANTHER SERINE/ARGININE REPETITIVE MATRIX PROTEIN 180 509 - -
Cpe14g00343 509 PANTHER SERINE/ARGININE REPETITIVE MATRIX PROTEIN 17 228 - -
Cpe14g00343 509 MobiDBLite consensus disorder prediction 80 113 - -
Cpe14g00343 509 MobiDBLite consensus disorder prediction 307 328 - -
Cpe14g00343 509 MobiDBLite consensus disorder prediction 278 350 - -
Cpe14g00343 509 MobiDBLite consensus disorder prediction 215 233 - -
Cpe14g00343 509 PANTHER - 180 509 - -
Cpe14g00343 509 PANTHER - 17 228 - -
Cpe14g00343 509 MobiDBLite consensus disorder prediction 143 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00343 - - - mcha:111012857 723.005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00135 Cpe-Chr10:863727 Cpe14g00343 Cpe-Chr14:2097169 1.10E-08 dispersed
Cpe14g00343 Cpe-Chr14:2097169 Cpe15g00823 Cpe-Chr15:8174305 1.75E-13 dispersed
Cpe14g00343 Cpe-Chr14:2097169 Cpe09g00794 Cpe-Chr9:7373228 5.69E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car16g00373 Cpe14g00343 . . . . . . . . Cla05g00996 Cam05g1087 Cec05g1095 Cco05g1089 Clacu05g1081 Cmu05g1031 Cre05g1105 . . Chy06g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012894 0 4 0 0 0 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00343 Cpe_Chr14 FPKM 13.821357 14.51916 0.755267 0.516407 1.203913 1.53452 1.557713 0.0 0.102551 0.0