Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00351 ATGGCTTCAGTGCTGCAAGGCGGCGATGATGCGGGAGGGAATCCCAGGAGAACGGATTATGAAAAGTTTAGTGCCGGGAAGCAACAGAAAGAGCGTAAAATTGCCAAACATGTCGCTCGAAATTCCGTAAAAACTCCTGCGGTCACCAATGGCGTTGCTAATCCGTCCTCTCCTTCGTATAATCCGATCGATGCTTTACTCACGTTTAGGGAATCTTCGCGTCAAAATCTGTGCATCGAACCGATTAACGCCGAGGTCATGCCGGGATATACAAGATTTGATAACCGAGTTAGGATTAGTTTGAATTCCAGATCGAGGTCTGGGATTAAAGAGCTTACGACGAAGCTGCGAGGCGAGCTTGATCAAGTCAGGAGTCTTGTGAAGAAGTTTGAAGCTCAGGAGTTGCAGCTTAGCGGCTATGGTGGGGATTTTGGACATAGTCAGTCACAGTTTTCCGCTAATAATTTGGTAGACAGGGTTGATACTACATTGAAGGCTAATTCCGAGGTTGGTTCTGCATATCTGCCCGAATCGAGGCTTGTTCGGAGTGTTTCGGTGGCTGAAAACTTCGGAGAATTTGCAGAGAAAGAGATGAACAAGCATATGAACAGGAAATATACTCCTACAAATGAGCTCCCATTGCCGGACTGCAACTTGGATGGAGGTAAGATTACTGGTCCTGTTCTTAAAATCTGTAGTAACTTGCTGGAAAGATTGATGAATCATAAATTTGGTTGGGTTTTTAATGTTCCTGTTGATGCAAAACGTTTGGGGCTTCATGATTATCATAAGATCATAACGAAGCCAATGGATTTGGGTACTGTAAAGATGAGACTAAATAAGAATTGGTATAAATCACCAAAAGAGTTTGCTGAGGATGTGAGACTAACATTTAGCAATGCCATTACATATAACCCGAAAGGGGAGGATGTTCATATTATGGCAGAGCAGTTGTCTAAGATATTTGAAGAGAAATGGAAGGTTATTGAAGGCAGACAAAATGATGGTTCAGTTTTACCAACACCCAGTTCTAGAAAATCTCCAGCTCTTGCCACTCCTCCAATGGAATCAAGAACTTTCAGTCGATCCGATTCTACGACGAAGCCTCCGCCTGCGAATCGGGGAAGTTTCGGTAAATCAGATTCGGTAACAAGACCCCTCAATCCCAAACAGACCCTTGTAGATGTTGTTCATCCTGACAAGAAACCAAAAGCAAAGAATCAAGAACACAGAGACATGACTTATGAAGAAAAACAGAAACTAAGCATTGATCTTCAGGATTTACCATCAGATAAGCTGAATAATGTTGTTAAGATTATCAAGAAGAGGAACCAGGGACTCTTTCAAAACGACGACGAAATTGAGTTGGATATTGGAAGTGTCGATTCCGAAACGCTTTGGGAACTTGAGAGGTTTGTGGCAAACTACAAAAGAAGTTTGATCAAGAACAAGCGAAAAGCTGAGGCCAGTCTTCAGTCAGGAGAGAAATCATCTCACCACTTGACCAAGGATACTGATCCAGCAGTGGCTAATGCAGCAGGAGAACATGTAGGTGGTAATGCAGTGGTTCTAGCAACTCTGAAAATGATAGTTCCTCGACATGTGGAGACGGAATTCGGTCTCACTCAGGCCTCTAACTTAAAGATTGTGTTCATCTTGCTTGCATTCTACACCAACATAGGATCGTATTGTATAGTTCGGGGACGACAGAGCAATCTCAGGGCTCATGCAGAGGGAAGAGATCAAAAGTTCTCTTTGATAGTTTTAGAAGATGGAATCAGAAATCTCATTCATGGTTTCGTTCGCATTTAA 1812 42.83 MASVLQGGDDAGGNPRRTDYEKFSAGKQQKERKIAKHVARNSVKTPAVTNGVANPSSPSYNPIDALLTFRESSRQNLCIEPINAEVMPGYTRFDNRVRISLNSRSRSGIKELTTKLRGELDQVRSLVKKFEAQELQLSGYGGDFGHSQSQFSANNLVDRVDTTLKANSEVGSAYLPESRLVRSVSVAENFGEFAEKEMNKHMNRKYTPTNELPLPDCNLDGGKITGPVLKICSNLLERLMNHKFGWVFNVPVDAKRLGLHDYHKIITKPMDLGTVKMRLNKNWYKSPKEFAEDVRLTFSNAITYNPKGEDVHIMAEQLSKIFEEKWKVIEGRQNDGSVLPTPSSRKSPALATPPMESRTFSRSDSTTKPPPANRGSFGKSDSVTRPLNPKQTLVDVVHPDKKPKAKNQEHRDMTYEEKQKLSIDLQDLPSDKLNNVVKIIKKRNQGLFQNDDEIELDIGSVDSETLWELERFVANYKRSLIKNKRKAEASLQSGEKSSHHLTKDTDPAVANAAGEHVGGNAVVLATLKMIVPRHVETEFGLTQASNLKIVFILLAFYTNIGSYCIVRGRQSNLRAHAEGRDQKFSLIVLEDGIRNLIHGFVRI 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2145030 2148847 + Cp4.1LG14g03750.1 Cpe14g00351 480735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00351 603 Pfam Bromodomain extra-terminal - transcription regulation 413 474 IPR027353 -
Cpe14g00351 603 MobiDBLite consensus disorder prediction 395 414 - -
Cpe14g00351 603 PANTHER OSJNBA0053K19.4 PROTEIN 3 515 - -
Cpe14g00351 603 MobiDBLite consensus disorder prediction 14 32 - -
Cpe14g00351 603 PANTHER TRANSCRIPTION FACTOR GTE4-LIKE ISOFORM X1 3 515 - -
Cpe14g00351 603 Pfam Bromodomain 232 316 IPR001487 GO:0005515
Cpe14g00351 603 ProSiteProfiles NET domain profile. 403 484 IPR027353 -
Cpe14g00351 603 MobiDBLite consensus disorder prediction 333 414 - -
Cpe14g00351 603 Gene3D - 219 336 IPR036427 GO:0005515
Cpe14g00351 603 ProSiteProfiles Bromodomain profile. 240 312 IPR001487 GO:0005515
Cpe14g00351 603 Gene3D - 406 486 IPR038336 -
Cpe14g00351 603 MobiDBLite consensus disorder prediction 1 32 - -
Cpe14g00351 603 CDD Bromo_plant1 228 326 IPR037377 -
Cpe14g00351 603 SMART bromo_6 221 331 IPR001487 GO:0005515
Cpe14g00351 603 PRINTS Bromodomain signature 243 256 IPR001487 GO:0005515
Cpe14g00351 603 PRINTS Bromodomain signature 259 275 IPR001487 GO:0005515
Cpe14g00351 603 PRINTS Bromodomain signature 275 293 IPR001487 GO:0005515
Cpe14g00351 603 PRINTS Bromodomain signature 293 312 IPR001487 GO:0005515
Cpe14g00351 603 SUPERFAMILY Bromodomain 208 330 IPR036427 GO:0005515
Cpe14g00351 603 MobiDBLite consensus disorder prediction 336 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00351 - - - bhj:120086113 826.624
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00510 Cpe14g00351 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00815 Cpe-Chr4:7651818 Cpe14g00351 Cpe-Chr14:2145030 8.10E-107 dispersed
Cpe14g00351 Cpe-Chr14:2145030 Cpe16g00757 Cpe-Chr16:7573912 4.02E-102 dispersed
Cpe01g00510 Cpe-Chr1:2945155 Cpe14g00351 Cpe-Chr14:2145030 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g137 . . . . . . Bma10g00481 . Cmo16g00449 Cmo04g00605 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1035 Cone15ag1021 . . . . . . Bda05g00783 . . Bpe03g00850 . . . . . Cma04g00565 Cma16g00417 Car04g00536 Car16g00382 Cpe14g00351 Cpe01g00510 . . . . . . . Cla07g00947 Cam07g1022 Cec07g1092 Cco07g1071 Clacu07g0991 Cmu07g0987 Cre07g1362 . . Chy07g00961 Cme07g01330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003323 2 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 9 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00351 Cpe_Chr14 FPKM 33.551888 31.443249 7.674675 6.132784 13.510684 14.016761 13.5092 0.607079 0.285455 0.349709