Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00368 ATGTGGACCGTCGAAACCCCATCGGAGGAACTCGGCGTTTCGATTCTCTACTGTTCGACAAATCTCACTTCTTTTGAGCTATCGAAATCCATGAGAATGAGGGAGGAAGAAATCGAGAAGCTCCGAGGCGTAGTAAGGGACTGCGTGAGCAAGCATCTCTACTCATCCGCCATTTTCTTCGCTGACAAAGTTGCCGCTTTCACTGAGGACCCTGCCGACGTTTACATGCAGGCGCAGGCCCTCTTTCTTGGCCGCCATTTTCGTCGTGCGTTTCACCTCCTTAATGCCTCCAAGATCGTCCTCCGCGATCCGCGGTTTCGTTACCTTGCTGCTAAGTGTCTCGAGTGGGACCAATGCCTCATGATGCTTGGTGATGCCAAAGTGGACGAGCATGGCAATGTTCTTGATAATAAGGATCACAGTGGCATGTACCTCGACAAAGATTCCGAGGATCGTGAGATTAATATAGCCGCAGCAACATGCTTTTTAAGAGGCAAGGCATATGAAGCTCTGGAAAATCGCACTCAGGCTCGACTTTGGTATAAAGCTGCTATCAAAGCTGACCCTCTATGTTATGAGGCTTTGGAGTGCCTAATAGAAAAATCAAGTCTACTTTTATCATTGCAATTTGGTCCCGAAGATGGATGGCTATCATCATTTTATGCATGCTTAATAAAGAAGTATGATAAAGAAAATATTATTGAAGCGAGATTCAAAGAACTTGAAAGGGAAAGTTGTAATTCTGAAAGTTACGATCCATCATTTACGCGTACTTTAAAAACTAACACCGATCTTTTAGCTTGCAAAGCTGAATACTACCATCAATGTGGTGAATATCAGAAATGCTTTGAACTTACCTCTGTTCTCCTTGAAAAAGATCCATTCCATTTGAAAAGTACACTGGTACATTTAGCGGCTGCGATGGAGCTTGGACATTCGAATGAACTTTATCTAATGGCGTGCAACCTGGTCAAGGACTATCCTCAAAAGGCTTTGTCATGGTTTGCTGTTGGTTGCTATTACTTCTGTATCAAAAAGTATGATCAATCGCGTCGCTATTTCAGCAAAGCCACAAGTCTGGATGGAACATTTGCACCTGCTTGGATAGGTTATGGTAACGCTTATGCTGCTCAAGAAGAGGGGGATCAAGCCATGTCTGCCTATCGCACTGGTGCTCGATTGTTTCCTGGGTGTCATTTACCAACATTGTACATTGGTATGGAATATATGCGAACTCACAGCTTCAAGCTTGCTGAGCAGGCAAAGACAATTTGTTCATCAGATCCTCTTGTTTACAATGAGCTTGGAGTTGTTGCTTATGACATGAAAGAGTACAATAAAGCAGCATGGTGGTTTGAGAAAACTTTGGCCTGTATCCCATCTCCTTTGAGTGAAATGTGGGAGCCTACTGTCGTTAATCTCGCCCATTCATACCGAAAACTAAAGATGTACCGTGAAGCAATCATGTACTATGAGAAGGCACTTGCCTTATCAACAAGAAGCCTTAGCACTTATGCTGGTCTTGCATATACTTATCATTTGCAGGCTTTGTGGCTGAAACCAGACGATCAGTTCTGTACTGAAATGTTAAGTTTAGCTCTTATGGACGAATGCCAAAATGGGATGGACCCAAAGGCAGACCTTCGGCGAAGTGAGGTCTTTGTTTAA 1668 43.71 MWTVETPSEELGVSILYCSTNLTSFELSKSMRMREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTEDPADVYMQAQALFLGRHFRRAFHLLNASKIVLRDPRFRYLAAKCLEWDQCLMMLGDAKVDEHGNVLDNKDHSGMYLDKDSEDREINIAAATCFLRGKAYEALENRTQARLWYKAAIKADPLCYEALECLIEKSSLLLSLQFGPEDGWLSSFYACLIKKYDKENIIEARFKELERESCNSESYDPSFTRTLKTNTDLLACKAEYYHQCGEYQKCFELTSVLLEKDPFHLKSTLVHLAAAMELGHSNELYLMACNLVKDYPQKALSWFAVGCYYFCIKKYDQSRRYFSKATSLDGTFAPAWIGYGNAYAAQEEGDQAMSAYRTGARLFPGCHLPTLYIGMEYMRTHSFKLAEQAKTICSSDPLVYNELGVVAYDMKEYNKAAWWFEKTLACIPSPLSEMWEPTVVNLAHSYRKLKMYREAIMYYEKALALSTRSLSTYAGLAYTYHLQALWLKPDDQFCTEMLSLALMDECQNGMDPKADLRRSEVFV 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2232735 2238866 + Cp4.1LG14g03610.1 Cpe14g00368 480752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00368 555 Pfam Anaphase-promoting complex, cyclosome, subunit 3 51 114 - -
Cpe14g00368 555 ProSiteProfiles TPR repeat profile. 331 364 IPR019734 GO:0005515
Cpe14g00368 555 SUPERFAMILY TPR-like 322 518 IPR011990 GO:0005515
Cpe14g00368 555 ProSiteProfiles TPR repeat profile. 429 462 IPR019734 GO:0005515
Cpe14g00368 555 Gene3D Tetratricopeptide repeat domain 37 536 IPR011990 GO:0005515
Cpe14g00368 555 ProSiteProfiles TPR repeat profile. 468 501 IPR019734 GO:0005515
Cpe14g00368 555 SUPERFAMILY TPR-like 158 307 IPR011990 GO:0005515
Cpe14g00368 555 ProSiteProfiles TPR repeat profile. 365 398 IPR019734 GO:0005515
Cpe14g00368 555 SMART tpr_5 331 364 IPR019734 GO:0005515
Cpe14g00368 555 SMART tpr_5 468 501 IPR019734 GO:0005515
Cpe14g00368 555 SMART tpr_5 263 296 IPR019734 GO:0005515
Cpe14g00368 555 SMART tpr_5 158 191 IPR019734 GO:0005515
Cpe14g00368 555 SMART tpr_5 429 462 IPR019734 GO:0005515
Cpe14g00368 555 SMART tpr_5 365 398 IPR019734 GO:0005515
Cpe14g00368 555 Pfam Tetratricopeptide repeat 159 189 IPR019734 GO:0005515
Cpe14g00368 555 Pfam Tetratricopeptide repeat 472 498 IPR019734 GO:0005515
Cpe14g00368 555 PANTHER CELL DIVISION CYCLE PROTEIN 16 HOMOLOG 38 540 - -
Cpe14g00368 555 PANTHER CELL DIVISION CYCLE 16,23,27 38 540 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00368 K03353 APC6, CDC16; anaphase-promoting complex subunit 6 - csv:101217217 997.653
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00606 Cpe14g00368 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00368 Cpe-Chr14:2232735 Cpe18g00095 Cpe-Chr18:2482318 2.85E-06 dispersed
Cpe01g00606 Cpe-Chr1:3492717 Cpe14g00368 Cpe-Chr14:2232735 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g99 . . . . . . . Bma13g00927 Cmo16g00470 Cmo04g00718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00730 . . . . . . . . . Cma04g00672 Cma16g00435 . . Cpe14g00368 Cpe01g00606 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006118 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00368 Cpe_Chr14 FPKM 54.416595 47.588692 26.464956 25.57921 14.831073 17.069063 17.773741 11.792223 11.76873 14.567642