Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00370 ATGTCTCTTCGCAGATCGTTTCTCTCTCGGAAGTTTTCTTCCAAGTCGTCGTTTAGAGATCCGAATGGTGTAGAGGGAATTGTTCGAGTGGCCGTGTCGGAGGTCGAAGGTGCCTCCGGTCTGCCCGGCGGGACTGATGGCGACTTGATGCAGGGTGAATCTTCTTGGTCTTCTATGCTACCGGAGCTTCTCCGGGAGATTATTCAGCGGGTTGAGGCTTCTGAGGACGGTTGGCCCAACCGCCAAAACGTTGTTTCCTGTGCTTGTGTCTGTAAACGCTGGCGGGATATTACTAAGGAGATCGCCAGGGGTACCCCTCATTCCGGGAAGATTACTTTCCCTTCTTGCCTCAAACAGCCTGGACCAAGCGATCTTCCACATCAGTGTCTTATAAAACGGAACAAGAAGACTTCAACGTTTTACCTTTACCTTGCCCTTACACCATCTCATTTAAGGGTTATTTCCCCTACTCCAGCATTTACAGATAAGGGAAAGTTCCTCTTAGCTGCACGGAGATATAGGCATGGTGCTCATACCGAGTATATAATATCTCTTGATGCTGAAGAATTATCACAAGGAAACAATGCATATGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACCAATTTTACTATTTATGATAGCCAACCACCACATAATGGTGCAAAGCCATCGAGCAGTAAATCGAGCCGCCGCTTTGCAAGCAAGCAAATCAGCCCACAAGTGTCTGCAGGTAACTTCGAGGTTGGGCAAGTCTCCTACAAATTTAATCTTTTGAAATCAAGAGGTCCGAGGAGGATGATGTGCTCTCTAAAGTGCCCAGTATCAGAAGAATCTGTAACCAGCAAACCCTGCGAAAACTCGATGATGAAGAAATCTGAGTCTTTTTCTTCCTCATCAGGGTCGACAATCTTACGAAACAAGGCTCCTAGATGGCATGAACACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTGACAGTAGCATCTGTTAAAAACTTTCAACTTGTTGCCACTATTGACCATAGCCAGCCAGGAGGTAAAGGGGACGAAGAAACAGTCCTACTACAGTTCGGAAAGGTAGGCGACGATACCTTTACTATGGATTATAGACAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACGAAGTTGGCATGCGAGTAG 1188 46.97 MSLRRSFLSRKFSSKSSFRDPNGVEGIVRVAVSEVEGASGLPGGTDGDLMQGESSWSSMLPELLREIIQRVEASEDGWPNRQNVVSCACVCKRWRDITKEIARGTPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFYLYLALTPSHLRVISPTPAFTDKGKFLLAARRYRHGAHTEYIISLDAEELSQGNNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMMCSLKCPVSEESVTSKPCENSMMKKSESFSSSSGSTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATIDHSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2264319 2268568 - Cp4.1LG14g03520.1 Cpe14g00370 480754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00370 395 Pfam F-box domain 56 101 IPR001810 GO:0005515
Cpe14g00370 395 ProSitePatterns Tub family signature 1. 323 336 IPR018066 -
Cpe14g00370 395 Gene3D Tubby Protein; Chain A 112 395 IPR025659 -
Cpe14g00370 395 SUPERFAMILY F-box domain 53 99 IPR036047 GO:0005515
Cpe14g00370 395 PRINTS Tubby superfamily signature 181 197 IPR000007 -
Cpe14g00370 395 PRINTS Tubby superfamily signature 197 221 IPR000007 -
Cpe14g00370 395 PRINTS Tubby superfamily signature 246 273 IPR000007 -
Cpe14g00370 395 PRINTS Tubby superfamily signature 305 322 IPR000007 -
Cpe14g00370 395 PRINTS Tubby superfamily signature 323 339 IPR000007 -
Cpe14g00370 395 PRINTS Tubby superfamily signature 352 371 IPR000007 -
Cpe14g00370 395 PRINTS Tubby superfamily signature 373 395 IPR000007 -
Cpe14g00370 395 Pfam Tub family 117 390 IPR000007 -
Cpe14g00370 395 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 395 - -
Cpe14g00370 395 ProSitePatterns Tub family signature 2. 380 395 IPR018066 -
Cpe14g00370 395 MobiDBLite consensus disorder prediction 215 235 - -
Cpe14g00370 395 SUPERFAMILY Tubby C-terminal domain-like 107 395 IPR025659 -
Cpe14g00370 395 Gene3D - 51 102 - -
Cpe14g00370 395 PANTHER TUBBY-RELATED 1 395 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00519 Cpe14g00370 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00370 Cpe-Chr14:2264319 Cpe17g00002 Cpe-Chr17:23583 5.08E-130 dispersed
Cpe01g00519 Cpe-Chr1:2985673 Cpe14g00370 Cpe-Chr14:2264319 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50500 PF01167 Tub 1.10E-101 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00370 K19600 - csv:101211968 640.958