Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00373 ATGAGATCGCCATTGTTGACGCCTCTTCTGATCTCTTTATTTTTCCTGTTCTTTTCTTTCTCTCTTGCTCTCGTGCCTGCTAACGAGACCTTCAAGTTCGTCAATGAAGGCGACTTTGGTGAGTTCATCATCGAGTACGACGGCACCTACAGAGTTCTCAGCATCTTCAGATTTCCATTTCAGTTAGCTTTCTACAACACGACGCCGAACGCTTACACTCTCGCTCTTCGAATTTCGATTCGTCGCTCCGAATCGGCGATACGGTGGGTTTGGGAGGCCAATCGCGGCCGTCCTGTGCGCGAAAATGCTACATTCTCTCTCTCCGCCAACGGAAACCTAGTTCTCGCTGAAGCCGACGGCACTGTTGTATGGCAATCGAACACAGCCAACAAAGGCGTTGTTGGATTCGAATTGCTTCCGAGTGGCAACATGGTGTTGTTAGACTCCAATGGCAAATTCCTCTGGCAGAGCTTCGATTCGCCGACGGACACACTCCTAGTCGGCCAATCGCTCCGTCTCGGCGGGCCAACGAAGCTAGTAAGCCGCGCATCGGAGGTAATGAACGTCAATGGACCTTACAGCCTTGTAATGGAACGAAAAGCCCTATCTCTGTACTACAAAAGCCCTAACTCTCCAAAACCGATGCGTTACTTCACATCCTCAGATTGGTTCACAATCCAGAAAGGCACTCTCTCAAAAATCACACTAAACGCCGCCGTTGAGCCAGATCAAGGATTCGCCACCGAACTAACACTGAATTACGAAGTCTCCGGCTCGATGGAGAGCGGCGGTCCAATTCTAACCCGGCCGAAGTACAACAGCACACTAACATTCCTCCGATTAGGAATCGACGGAAACCTCCGCCTGATCACATACAACGACAAAGTCGATTGGGGCCCGTCGGAGATTTCGTTCACACTCTTCGATAGGGATTCAACTTGGGAGAACGAATGCCAATGGCCAGAGCGGTGCGGACAGTTCGGGTTGTGCGAGGACAACCAGTGCGTAGCCTGTCCAACAGAGAACGGACTGGCGGGATGGAGCAAGAGCTGCGCGCCGAAGAAGGTAAGTTCCTGTGATCCCAAAAGCTTCCATTACTATAAACTAGTCGGCGTGGATCATTTCTTGACAAAGTACAACAAAGGAGAAGGGCCAATGGGACAGAAGGAGTGTGAGAAGAAGTGCAATTTGGATTGCAAATGTTTGGGATATTTTTACCAAACCAAAGGGTCGCTTTGTTGGGTTGCAAATGAGCTTAAAACTTTGATAAAAGTGGCCAATTCCACTCATTTGGGCTTCATCAAAACACCCAATAAATCGCCATTGTTGACGCCTCTTCTGATCTCTTTCTTTTTCCTGTTCTTTTCTTTCTCTCTTGCTCTCGTGCCTGCTAACGAGACCTTCAAGTTCGTCAATGAAGGCGAGTTCGGTGATTTCGCCGTCGAGTACGGCGGCACCTACAGAGTTCTCAGCATCTTCAGATTTCCATTTCAGTTAGCTTTCTACAACACGACGCCGAACGCTTACACGCTCGCTCTTCGAATTTCGATTCGTCGCTCCGAATCGGCGATACGGTGGGTTTGGGAGGCCAATCGCGGCCGTCCTGTGCGCGAAAATGCTACATTCTCTCTCTCCGCCAACGGAAACCTAGTTCTCGCTGAAGCCGACGGTACTGTTGTATGGCAATCGAACACAGCCAACAAAGGCGTTGTTGGATTCGAATTGCTTCCGAGTGGCAACATGGTGTTGTTCGACTCCAATGGCAAATTCCTCTGGCAGAGCTTCGATTCGCCGACGGACACACTCCTAGTCGGCCAATCGCTCCGTCTCGGCGGGCCAATGAAGCTAGTAAGCCGTGCATCGGAGGAAATGAACGTTAATGGACCTTACAGCCTTGTAATGGAACGAAAAGTCCTATCTCTGTACTACAAAAGCCCTAACTCTCCAAAACCGATGCGGTACTACTCATCCACAGATATGCTCTCAGTCCGGAAAGGCGTTCTCGCAAATATCACACTAAACGCCGCCGTAGATCCAGATCAAGGATTCGCCACCGAATTAACACTGAACTACGAAGTCACCGGCTCGACTGAGAGCGGCGGTCCAATTCTAACCCGGCCGAAGTACAACAGCACACTAACATTCCTCCGATTAGGAATCGACGGCAACCTCCGCCTGATCACATACAACGACAAAGTCGATTGGGGCCCGTCGGAGATTTCGTTCACACTCTTCGATAGGGATTCAACTTGGGAGAACGAATGCCAATGGCCAGAGCGGTGCGGACAGTTCGGGTTGTGCGAGGACAACCAGTGCGTAGCCTGTCCAACAGAGAACGGACTGGCGGGATGGAGCAAGAGCTGCGCGCCAAAGAAGGTAAGTTCCTGCGATCCCAAAAGCTTCCATTACTATAAACTAGTCGGTGTGGATCATTTCTTGACAAAGTACAACAAAGGGGAAGGGCCAATGGGACAGAAGGAGTGTGAGAAGAAGTGCAATTTGGATTGCAAATGTTTGGGATATTTTTACCAAACCAAAGGGTCGCTTTGTTGGGTTGCAAATGAGCTTAAAACTCTGATAAAAGTGGCCAATTCCACTCATTTGGGCTTCATCAAAACACCCAATAAG 2628 49.77 MRSPLLTPLLISLFFLFFSFSLALVPANETFKFVNEGDFGEFIIEYDGTYRVLSIFRFPFQLAFYNTTPNAYTLALRISIRRSESAIRWVWEANRGRPVRENATFSLSANGNLVLAEADGTVVWQSNTANKGVVGFELLPSGNMVLLDSNGKFLWQSFDSPTDTLLVGQSLRLGGPTKLVSRASEVMNVNGPYSLVMERKALSLYYKSPNSPKPMRYFTSSDWFTIQKGTLSKITLNAAVEPDQGFATELTLNYEVSGSMESGGPILTRPKYNSTLTFLRLGIDGNLRLITYNDKVDWGPSEISFTLFDRDSTWENECQWPERCGQFGLCEDNQCVACPTENGLAGWSKSCAPKKVSSCDPKSFHYYKLVGVDHFLTKYNKGEGPMGQKECEKKCNLDCKCLGYFYQTKGSLCWVANELKTLIKVANSTHLGFIKTPNKSPLLTPLLISFFFLFFSFSLALVPANETFKFVNEGEFGDFAVEYGGTYRVLSIFRFPFQLAFYNTTPNAYTLALRISIRRSESAIRWVWEANRGRPVRENATFSLSANGNLVLAEADGTVVWQSNTANKGVVGFELLPSGNMVLFDSNGKFLWQSFDSPTDTLLVGQSLRLGGPMKLVSRASEEMNVNGPYSLVMERKVLSLYYKSPNSPKPMRYYSSTDMLSVRKGVLANITLNAAVDPDQGFATELTLNYEVTGSTESGGPILTRPKYNSTLTFLRLGIDGNLRLITYNDKVDWGPSEISFTLFDRDSTWENECQWPERCGQFGLCEDNQCVACPTENGLAGWSKSCAPKKVSSCDPKSFHYYKLVGVDHFLTKYNKGEGPMGQKECEKKCNLDCKCLGYFYQTKGSLCWVANELKTLIKVANSTHLGFIKTPNK 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2283825 2289159 + Cp4.1LG14g03470.1 Cpe14g00373 480757

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00373 876 Pfam D-mannose binding lectin 527 609 IPR001480 -
Cpe14g00373 876 Pfam D-mannose binding lectin 90 174 IPR001480 -
Cpe14g00373 876 SMART blect_4 481 598 IPR001480 -
Cpe14g00373 876 SMART blect_4 44 161 IPR001480 -
Cpe14g00373 876 CDD PAN_AP_plant 794 874 - -
Cpe14g00373 876 Gene3D - 40 160 IPR036426 -
Cpe14g00373 876 Gene3D - 496 597 IPR036426 -
Cpe14g00373 876 PANTHER SECRETED GLYCOPROTEIN EP1, PUTATIVE-RELATED 450 876 - -
Cpe14g00373 876 PANTHER SECRETED GLYCOPROTEIN EP1, PUTATIVE-RELATED 11 439 - -
Cpe14g00373 876 CDD PAN_AP_plant 357 437 - -
Cpe14g00373 876 PANTHER - 11 439 - -
Cpe14g00373 876 PANTHER - 450 876 - -
Cpe14g00373 876 CDD B_lectin 481 598 IPR001480 -
Cpe14g00373 876 CDD B_lectin 45 161 IPR001480 -
Cpe14g00373 876 SUPERFAMILY alpha-D-mannose-specific plant lectins 507 645 IPR036426 -
Cpe14g00373 876 ProSiteProfiles Bulb-type lectin domain profile. 478 596 IPR001480 -
Cpe14g00373 876 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 208 IPR036426 -
Cpe14g00373 876 ProSiteProfiles Bulb-type lectin domain profile. 41 159 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00373 - - - csv:101212696 731.865
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe06g00651 Cpe14g00373 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00021 Cpe-Chr3:102505 Cpe14g00373 Cpe-Chr14:2283825 3.00E-17 dispersed
Cpe06g00651 Cpe-Chr6:4049263 Cpe14g00373 Cpe-Chr14:2283825 2.02E-121 dispersed
Cpe14g00373 Cpe-Chr14:2283825 Cpe03g00091 Cpe-Chr3:472686 3.08E-29 dispersed
Cpe14g00373 Cpe-Chr14:2283825 Cpe08g01181 Cpe-Chr8:8734359 4.47E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g115 . . . Bda09g00539 . . . . Cmo16g00478 . . Cma09g00816 . Car09g00733 . Cpe06g00651 . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00788 . Bpe11g00449 . . . . . Cmo09g00811 . Cma16g00443 . . Cpe14g00373 . . . . . . . . . . . . . . . . Csa04g00802 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004202 2 4 3 2 3 1 0 1 1 2 1 1 1 1 2 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00373 Cpe_Chr14 FPKM 10.082452 12.017134 14.748368 13.64121 7.15633 6.003653 7.902308 8.528357 7.628291 8.10139