Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00374 ATGGACTTGCCAATGAAGAGGCCTATTTCAGGTGATCGGAGAACCCAGTACAGAATAGAAGCTAGAAATCTTTGTTACAAAATAAGTGAAAGTTTTGATGGGTTGAATTGGTTCTGTGGTGGAGGCAGCTCAAAGAGAGTTCCAAAGTTCATCTTAAAGAATGTGAACTGTGAGGCAAGAGCAGGGGAGATTACTGCCATTGCTGGTCCTAGTGGGGCTGGCAAAACAACATTGCTAGAGATTCTTGGAGGGAACATACCTTTAAAGAAGATTTCAGGTCAAGTGCTTGTTAATGATCAGCATATGATTGAGAAAACGTTTCCAAGAATCTCGGGATACGTCACGCAGGACGATGCGCTTTTTCCTTTCCTCACAGTTGAAGAAACACTCATGTATAGTGCTCTGTTGAGGCTTGGTGGTGGGAGAAAAGAGGCTGAATCTAGAGTGAGGAAGCTAATGAAGGACCTTGGATTGGAACACGTAGCAGCGTCGAGAGTTGGAGATGGATCGAACCGAGGCATTTCAGGAGGCGAAATGCGTCGAGTTTCGATTGGAGTTGAATTGGTTCATGATCCAGCTGTGATTTTCATTGATGAACCTACTTCAGGGTTGGATTCTGTCTCGGCAGTTCATGTTATGTCAGTGCTTAGAAGAATGGTCATTAGCCAAGGTAAGACTGTTCTTATAACCATCCATCAACCCGGTTTTCGAATCATGGAACTCTTTGATCGTCTGATTCTTCTGTCGAGTGGAGTTGTGATGCATAATGGACCATTGGGTCATCTTGAGGAGAAGCTTAAGCTTGCTACTCATCAGATCCCTCACCATGTCAATGTTCTTGAATTCGCCATTGACGTGGTGGATAGCTTGGCTATGCATACTTCAGAAACTTTCAACAAACTCCATTACCAACAAAACCGGGTTGAGAATCAGACAATAAGAGCTCGACACATCGATACGAAGGACGAAGAATCCATTTCGTTCCAGAATTCTCGATCCACGGAAGTCGTAATACTAGGACAAAGGTTTTTCAGAAACACGTTTAGGACCAAACAACTCTTTGCTACAAGAGTCATTCAAGCCTTGGTGGCTGGATTAGTACTTGGGACCATATTCTTCAAGACCGGGAATAACAACGACAAAACTACGTTGCAAACCCGGCTCGGGTTCTTCGCCTTTAGTCTCACGTTCTTGCTGTCTTCAACGACAGAAGGCCTTCCAATCTTCTTGAGGGAGAGAATGATCCTAATGAGAGAGACATCAAGAGGTGCTTACAGAGTATCTTCCTATGTTCTAGCAAACACATTCATATTTCTCCCATTCCTTCTGATGGTCTCTCTACTCTTCGCAGCCAGTGTTTACTGGTTGGTTGGTTTGAAAAACGACATTTTCGGGTTCTTTTACTTCTCTCTAATCGTTTGGATGGTCGTTCTAATGTCGAATTCTTTCGTAGCATGTTTCAGTGCTCTTGTCCCAAATTTCATTACAGGAAACTCAGTAATATCAGGGCTAATGGGGTGTTTCTTTCTGTTTTCTGGTTACTTTATATCAAAGAAGAACATCCCCAAGTACTGGATTTTCATGCACTATTTGAGTCTTTTCAAGTACCCATTTGAGTGTTTCTTGATAAATGAGTATGGAGGAGATCCAGGGAAGGGAAGATGCATAGAGTCCAAACAAGGAGTATGTACAACATATGGAAAAGTGTTCTTAAGACAACAAGATATAAAAGAGTCACACAAATGGAGCAATTTGGCAGTAATGTTGGGATTCATTGTTGGGTACAGGATCCTGTCTTTTGTGATCTTGTGGTACAGATGTAACAGAACCAGAAGCTAG 1839 42.52 MDLPMKRPISGDRRTQYRIEARNLCYKISESFDGLNWFCGGGSSKRVPKFILKNVNCEARAGEITAIAGPSGAGKTTLLEILGGNIPLKKISGQVLVNDQHMIEKTFPRISGYVTQDDALFPFLTVEETLMYSALLRLGGGRKEAESRVRKLMKDLGLEHVAASRVGDGSNRGISGGEMRRVSIGVELVHDPAVIFIDEPTSGLDSVSAVHVMSVLRRMVISQGKTVLITIHQPGFRIMELFDRLILLSSGVVMHNGPLGHLEEKLKLATHQIPHHVNVLEFAIDVVDSLAMHTSETFNKLHYQQNRVENQTIRARHIDTKDEESISFQNSRSTEVVILGQRFFRNTFRTKQLFATRVIQALVAGLVLGTIFFKTGNNNDKTTLQTRLGFFAFSLTFLLSSTTEGLPIFLRERMILMRETSRGAYRVSSYVLANTFIFLPFLLMVSLLFAASVYWLVGLKNDIFGFFYFSLIVWMVVLMSNSFVACFSALVPNFITGNSVISGLMGCFFLFSGYFISKKNIPKYWIFMHYLSLFKYPFECFLINEYGGDPGKGRCIESKQGVCTTYGKVFLRQQDIKESHKWSNLAVMLGFIVGYRILSFVILWYRCNRTRS 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2291980 2293818 - Cp4.1LG14g03340.1 Cpe14g00374 480758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00374 612 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 1 604 - -
Cpe14g00374 612 SMART AAA_5 61 252 IPR003593 -
Cpe14g00374 612 Pfam ABC-2 type transporter 335 546 IPR013525 GO:0016020|GO:0140359
Cpe14g00374 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 268 IPR027417 -
Cpe14g00374 612 CDD ABCG_EPDR 31 257 - -
Cpe14g00374 612 Pfam ABC transporter 52 202 IPR003439 GO:0005524
Cpe14g00374 612 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 604 - -
Cpe14g00374 612 Pfam ABC-2 type transporter 232 298 IPR043926 GO:0140359
Cpe14g00374 612 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524
Cpe14g00374 612 Gene3D - 12 284 IPR027417 -
Cpe14g00374 612 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 19 275 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00374 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101213419 1087.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00599 Cpe14g00374 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00145 Cpe-Chr3:733348 Cpe14g00374 Cpe-Chr14:2291980 1.01E-120 dispersed
Cpe13g00830 Cpe-Chr13:7364379 Cpe14g00374 Cpe-Chr14:2291980 1.26E-128 dispersed
Cpe14g00374 Cpe-Chr14:2291980 Cpe15g00841 Cpe-Chr15:8287223 0 dispersed
Cpe14g00374 Cpe-Chr14:2291980 Cpe14g00074 Cpe-Chr14:407677 3.18E-157 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00480 . . . . Cpe14g00374 . . . . . . . . . . . . . . . . . . .
Vvi19g79 . . . . Bpe09g00267 . . Bma13g00924 Cmo16g00479 Cmo04g00712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00726 Bda05g00812 . . Bpe03g00874 . . . . . Cma04g00664 Cma16g00445 . . Cpe14g00374 Cpe01g00599 . . . . . . . Cla07g00969 Cam07g1042 Cec07g1113 Cco07g1090 Clacu07g1014 Cmu07g1007 Cre07g1384 . . Chy07g00983 Cme07g01358
Vvi19g128 . . . . Bpe09g00254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1028 Cone15ag1013 . . . . . Blo10g00737 . Bda12g00821 . . . . . . . . . . . Cpe14g00374 . . . . . . . . . . . . . . . . Csa04g00799 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003301 1 2 1 0 2 2 1 2 2 1 2 2 2 1 1 1 2 4 2 2 1 2 2 2 1 1 2 2 2 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00374 Cpe_Chr14 FPKM 6.835275 7.107827 16.314592 15.217164 11.100572 11.768818 11.85981 19.984177 17.123951 19.122999