Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00383 ATGAGAAGCTCCACGTCCATGGCGGCTGATTCTTCTTCTTCCTCTGCAGCATTCTTCTCTGGGATTCCATTGATAGACCTCTCTGCACCAGATGCTAAACAACTCATTGTCAAAGCTTGTGAAGAACTCGGATTCTTTAAGGTTGTCAACCATGGTGTCCCCATGGAATTCATCTCCTCTCTTGAATTAGAATCCACCAAATTCTTCTCCCTTCCTCTCTCTGAAAAACAGAGAGCTGGCCCTCCTTCCCCTTTTGGCTATGGAAACAAACAAATTGGCTGCAATGGCGATGTCGGTTGGGTTGAATATCTCCTCTTGAACACTCATCTCGAATCCAACTCTGATGGGTTCCTCTCCATTTTTGGCCAAGACCCACAAAAACTCCGCTCTGCTGTGAACGATTACATCTCGGCTGTGAGGAACATGGCGGGTGAAATCCTCGAGCTAATGGCGGAAGGGTTGATGATTCAACAACGAAACGTGTTCAGTAAGCTCGTGATGGATGAAGAGAGCGACTCTGTTTTCAGAGTGAACCATTATCCGCCATGTCCAGACCTTCAAGCTTTAAAAGGAAGAAACATGATCGGATTTGGAGAACACACAGACCCTCAAATCATTTCAGTTTTGAGATCAAACAACACTTCTGGATTTCAAATCTCTCTCGCAGATGGGAATTGGATATCTGTTCCTCCCGATCACAGCTCCTTCTTCATCAATGTTGGCGACTCTTTACAGGTGATGACTAATGGAAGATTCAAAAGTGTGAAGCATAGAGTTTTGACAAACAGCTCGAAGTCAAGGGTTTCAATGATCTACTTCGGTGGGCCACCGTTGAGTGAAAAGATAGCTCCTTTAGCTTCCCTTATGCAAGGAGAAGAAAGAAGTTTGTACAAAGAGTTTACATGGTTTGAGTACAAAAGATCAGCTTACAACTCCAGGTTGGCTGACAACAGGCTTGTGCCCTTTGAAAGAATTGCAGCCTCATAA 987 44.58 MRSSTSMAADSSSSSAAFFSGIPLIDLSAPDAKQLIVKACEELGFFKVVNHGVPMEFISSLELESTKFFSLPLSEKQRAGPPSPFGYGNKQIGCNGDVGWVEYLLLNTHLESNSDGFLSIFGQDPQKLRSAVNDYISAVRNMAGEILELMAEGLMIQQRNVFSKLVMDEESDSVFRVNHYPPCPDLQALKGRNMIGFGEHTDPQIISVLRSNNTSGFQISLADGNWISVPPDHSSFFINVGDSLQVMTNGRFKSVKHRVLTNSSKSRVSMIYFGGPPLSEKIAPLASLMQGEERSLYKEFTWFEYKRSAYNSRLADNRLVPFERIAAS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2348256 2350141 + Cp4.1LG14g03420.1 Cpe14g00383 480767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00383 328 Pfam 2OG-Fe(II) oxygenase superfamily 172 274 IPR044861 -
Cpe14g00383 328 PRINTS Isopenicillin N synthase signature 36 53 - -
Cpe14g00383 328 PRINTS Isopenicillin N synthase signature 200 221 - -
Cpe14g00383 328 PRINTS Isopenicillin N synthase signature 236 262 - -
Cpe14g00383 328 Pfam non-haem dioxygenase in morphine synthesis N-terminal 22 112 IPR026992 -
Cpe14g00383 328 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 276 IPR005123 -
Cpe14g00383 328 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 16 324 - -
Cpe14g00383 328 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 1 16 324 - -
Cpe14g00383 328 Gene3D - 2 316 IPR027443 -
Cpe14g00383 328 SUPERFAMILY Clavaminate synthase-like 19 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00383 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - csv:101215820 580.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00813 Cpe-Chr3:5069825 Cpe14g00383 Cpe-Chr14:2348256 6.52E-67 dispersed
Cpe09g00759 Cpe-Chr9:7059885 Cpe14g00383 Cpe-Chr14:2348256 4.91E-149 dispersed
Cpe10g00088 Cpe-Chr10:618900 Cpe14g00383 Cpe-Chr14:2348256 2.19E-137 dispersed
Cpe12g00875 Cpe-Chr12:7645108 Cpe14g00383 Cpe-Chr14:2348256 1.57E-87 dispersed
Cpe14g00383 Cpe-Chr14:2348256 Cpe20g00518 Cpe-Chr20:3018931 2.81E-155 dispersed
Cpe01g00585 Cpe-Chr1:3388963 Cpe14g00383 Cpe-Chr14:2348256 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g898 . . . . . . . . Cmo16g00489 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00453 . Car16g00411 Cpe14g00383 . . . . . . . . Cla07g00995 Cam07g1070 Cec07g1142 Cco07g1120 Clacu07g1044 Cmu07g1035 Cre07g1411 . . Chy07g01013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004421 1 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00383 Cpe_Chr14 FPKM 0.606031 0.725437 0.897712 0.785763 0.477224 1.288769 0.646993 2.933443 3.171951 2.768002