Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00413 ATGAAACACATTCTTGAGGGAGTTCATCCCACAATGTTCATTGTCAATCACCTTCTTCGTTCCACTCTCAGGTCTCAGTCCTTTGCTGCTTCTAGAAGAGCTTCACAAGAACATATCATCATGTTCAGCTTATACAGTACACAGGCTTCAGCACAAATAGAGGATCCAGGGTTTAAGGGGCATGATATGCTTGCACCTTTCACTACAGGATGGCAGTGCACAAATGAAAATCCACAAGTTATAGAAAGATCAGAGGGTTCATATGTATATGACACTAATGGAAGGAAGTACCTTGATTCTCTTGCTGGTCTATGGTGCACATCCTTAGGGGGAAATGAACCACGACTTGTGGCAGCTGCAACAAAACAACTAAATACCTTGCCATTTTACCACTCCTATTGGAATCGTACTACCAAGCCTGCATTGGATCTGGCAAAGGAACTGCTTGAAATGTTCACAGCTAGAAAAATGGGGAAAGTCTTTTTTACGAACAGTGGTTCAGAAGCCAATGATACTCAGGTCAAGCTGGTTTGGTATTATAACAATGCACTTGGAAGACCAAAAAAGAAAAAGTTCATTGCTCGCTCACATGCTTACCATGGTTCAACATTAGTAGCAGCCAGTGAAACAGAGGAAGAGTTCTCAACCAGATTAGCCAAAAACTTGGAGGAACTTATACTTAAGGAGGGGCCAGAGACGATTGCAGCGTTCATCGCTGAACCTGTCATGGGGGCTGGTGGTGCGATTCTTCCACCTACAACTTATTTTGAGAAGGAGTTGGTGCATATTTTGGAGCTGAATGTCGGAAAAATGATAATCAGCATTTATGGAAAGGCACTAAAGGCTACAGAAGAGAGAGTGAAGGAATTGAAGTCTCAGAGTCTGTATGGCTATAAGACGAAATCTAGGTTCCGTGATGACAGGAAAAGAAGGAAGGAAGAAAGAAAGTCACCTTCTTCGTTCCACTCTCAGGTCTCAGGTATCAAAATTAAACGCTCAATTCATCCTTTTCTTCTTAATTTTCTTACTGCTCCTTACGTATTATTTGTCCTATGCTTCTTGTCCTTTGCTGCTTCTAGAAGAGCTTCACATGAACATATCATCATGTCCAGCTTATACAGTACACAGGCTTCAGCACAAACAGAGGATCCAGGGTTTAAGGGGCATGATATGCTTGCACCTTTCACTACAGGATGGCAGTGCACAAATGAAAATCCACTAGTTATAGAAAAATCAGAGGGTTCATACGTATATGACACTAATGGAAGGAAGTACCTTGATTCTCTTGCTGGTCTATGGTGCACATCCTTAGGGGGAAATGAACCACGACTTGTGGCAGCTGCAGTAAAACAACTAAATACCTTGCCATTTTATCACTCCTATTGGAATCGTACTACTAGGCCTGCGTTGGATTTGGCAAAGGAACTGCTTGAAATGTTTACCGCTAGAAAAATGGGGAAAGTCTTTTTTACAAACAGTGGTTCAGAAGCTAATGATAGTCAGGTCAAGCTGGTATGGTACTATAACAATGCACTTGGAAGACCAAAAAAGAAAAAGTTCATAGCTCGGTCAAAGGCTATCACAGGTGGGCACCAAGGGTTTGACATTCCAGCTCCCTTTGTTCTGCACACTGATTGTCCACATTACTGGCGTTACCATCTTCCAGGTGAAACAGAGGAAGAGTTCTCAACAAGATTAGCGAAAAGGTTGGAGGACCTTATACTTAAGGAGGGGCCAGAGACGATTGCTGCGTTCATCGCTGAACCTGTCATGGGGGCTGGTGGTGTGATTCTCCCACCTACAACTTATTTTGAGAAGATCCAAGCTGTGCTCAAGAAGGAAAGGAATATTGTGGAGCAAGTAAATCGCATCTCCCAGAGGTTTCAAGATGGCATAAAAGCTTTCTCTGATAGCCCTATCATTGGAGAGATAAGGGGGACTGGCTTGATATCAGGCATAGATTTTGTAGACAATAAATCACCAAATGATCCATTCCCTCCTGAATGGGGAGTTGGTTCATATTTTGTGGCTGAATGTCGGAAAAATGGTTTGGTAGTACGTCCTGGAGGGGATACTATAACGATGGCTCCGCCACTTATCATCACTCCTCAAGAAGTTGATGAGTATTTACGGAAAGGCACTAAAGGCTACAGAAGAGAGAGTGAAGGAATTGAAGGCTCAGAGGTAGCTGCATATGGTTACAACAAACGGCCTGAAGGAACCGGATCCTGTCTACTCTTAGGTATGCACCAGCAGTTCGACATTCCAGCTACATTCGCCCTGCACACGGATTGTCCACATTACTGGCGTTACCATCTTCCAGGTGAAACGGAGGAAGAGTTCTCAACCAGATTAGCCAAAAACTTGGAGGACCTTATACTTAAGGAGGGGCCAGAGACGATTGCTGCATTCATCGCTGAACCTGTCATGGGGGCTGGTGGTGCGATCCTTCCACCTACAACTTATTTTGAGAAGATCCAAGCTGTGCTCAAGAAGTATGATATACTTTTTATTGCAGATGAGATAAGGGGGACTGGCTTGGTGTCAGGCACAGATTTTGTAGACAATAAATCACCAAATGATCCATTCCCTCCAGAATGGGGAGTTGGTGCATATTTTGGATCTGAATGTCGGAAAAATGGTTTGATAGTACGTCCTGCAGGGAATAATATAACAATGGCTCCACCATTTATCATCTCTCCTCAAGAAGTTGATGAGATAATCAGCATTTATGGAAAGGCACTGAAGGCTACTGAAGAGAGAGTGAAGGAATTGAAGGCTCAGAGGTCTCAGTCTGTCGCACATGAATATGTCATCCTAGCTCCCTTCCTGTCCCGTTTACAAAGTACACAGGCTTCACCACAAAGAGAGGATTCAGGGTTTAAGGGGCATGATATGCTTGCACCTTTCACTACAGGATGGCAGTGCACAAATGAAAATCCACTAGTAATAGAAAGATCAGAGGGTTCATATGTATATGACACTAATGGAAGGAAGTACCTTGATTCTCTTGCTGGTCTATGGTGCACATCCTTAGGGGGAAATGAACCACGACTTGTGGCAGCTGCAACAAAACAACTAAATACCTTGCCGTTTTACCACTCCTATTGGAATCATACTACCAAGCCTTCATTGGATCTGGCAAAGGAACTACTTGAAATGTTTACAGCTAGAAAAATGGGAAAAGTCTTTTTCACGAACAGTGGTTCAGAAGCCAATGACACTCAGCTTCCATGGTTCAACATTAATAGCAGCCAGTCTTACTGGAACATCCATATCTCAGGTGAAACAGAGGAAGAGTTCTCAACCAGATTAGCCAAAAACTTAGAGGATCTTATACTCAAGGAGGGACCAGAGACGATTGCTGCGTTCATCGCTGAACCTGTCATGGGCGCTGGTGGTGCTATTCTTCCACCTACAACTTATTTTGAGAGGATCCAAGCTGTACTCAAGAAGTATGATATACTTTTTATTGCTGATGAGGCACTTTCCTCGGCATACATTCCCATAGGAGCTGTTCTCGTGAGCCCTGAAATCTCTGATGTCATTCACTCTCAAAGTGACAAGCTAGGCATAATCAGTTCTTCAGCAACTATGGTTTTGCAGATAAGGGGGACTGGCTTGGTGTCAGGAACAGATTTTGTAGACAATAAATCACCAAATGATCCATTCCCTCCTGAATGGGGAGTTGGTGCATATTTTGTAGCTGAATGTCGGAAAAATGGTTTGATAGTACGTCCTGGAGGGGATACTATAACGATGGCTCCACCATTTATCATCTCCCCTCAAGAAGTTGATGAGTTAATCAGCATTTATGGGAAGGCACTGAAGGCTACCGAAGAGAGAGTGAAGAAATTGAAGGCTCAGAAAAAAGTATCACGGGAACGTGTCGTCCTCGCTCCTTTCCTGTCCCGCTTACATGGTACAGAGGCATCTGCACAAAAAGAGGATTCGAGGTTCAAGGGGCATGATATGCTTGCACCTTTTACTGCAGGATGGCAGACCACCGATGTTAGTCCACTGATTATAGAAAGATCTGAGGGTTCATATGTATATGACATTAATGGAAGGAAGTACCTTGATTCTCTTGCCGGTCTATGGTGCACATCCTTGGGTATCACAATCTGCACTAACACGAACTCTTGTTCTGCATATATTGAAAAGTTTAGTTTCAGTAAGTTGGTAAAGGCAATGCTGGAATTTGTAGGGGGAAATGAACCACGACTTGTGGAAGCTGCAACAAAACAACTAAATGTCTTGCCATTTTACCACTCCTTTTGGAATCGTACTACAAGGCCTTCTTTGGAGCTGGCAAAGGAACTGCTTGAAATGTTCACAGCTAGAAAAATGGGGAAAGTCTTTTTTACAAACAGTGGTTCAGAAGCTAATGATACTCAGGTCAAACTGGTATGGTACTATAACAATGCACTTGGAAGACCAGATAAGAAGAAGTTCATAGCTCGCTCAAAGGCCCTTCCAGCAATGCACCAGAAGTTTGACATTCCTGCTCCATTCGTTCTGCACACTGATTGTCCACATTACTGGCGTTACCATCTTCCAGGTGAGACAGAGGAAGAGTTCTCAACCAGATTAGCCAAAAACTTGGAAGACCTTATACTCAAGGAGGGACCAGAGACAATTGCTGCGTTCATCGCCGAACCTGTCATGGGTGCTGGTGGTGTGATTCCTCCACCAGCTACTTATTTTGAAAAGATCCAACCTGTGCTCAAGAAGTATGATATACTTTTCATTGCCGACGAGGGAAAGGAATATAGTGGAGCAAGAGTTGGTGCATATTTTGGAACCGAATGTCAGGAAAATGGTATGCTAGTACGTGTTGCAGGGGATACTATAATGATGTCTCCACCATTTATCATCTCCCCTCGAGAAGTAGATGAGTTAATCAGCATTTATGGGGAGGCACTGAAGGCTACTGAAGAGAGAGTGAAGGAATTGAAGGCTCAAAAGCGAAGTTTCTTCGAGAAGTGA 4989 43.46 MKHILEGVHPTMFIVNHLLRSTLRSQSFAASRRASQEHIIMFSLYSTQASAQIEDPGFKGHDMLAPFTTGWQCTNENPQVIERSEGSYVYDTNGRKYLDSLAGLWCTSLGGNEPRLVAAATKQLNTLPFYHSYWNRTTKPALDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPKKKKFIARSHAYHGSTLVAASETEEEFSTRLAKNLEELILKEGPETIAAFIAEPVMGAGGAILPPTTYFEKELVHILELNVGKMIISIYGKALKATEERVKELKSQSLYGYKTKSRFRDDRKRRKEERKSPSSFHSQVSGIKIKRSIHPFLLNFLTAPYVLFVLCFLSFAASRRASHEHIIMSSLYSTQASAQTEDPGFKGHDMLAPFTTGWQCTNENPLVIEKSEGSYVYDTNGRKYLDSLAGLWCTSLGGNEPRLVAAAVKQLNTLPFYHSYWNRTTRPALDLAKELLEMFTARKMGKVFFTNSGSEANDSQVKLVWYYNNALGRPKKKKFIARSKAITGGHQGFDIPAPFVLHTDCPHYWRYHLPGETEEEFSTRLAKRLEDLILKEGPETIAAFIAEPVMGAGGVILPPTTYFEKIQAVLKKERNIVEQVNRISQRFQDGIKAFSDSPIIGEIRGTGLISGIDFVDNKSPNDPFPPEWGVGSYFVAECRKNGLVVRPGGDTITMAPPLIITPQEVDEYLRKGTKGYRRESEGIEGSEVAAYGYNKRPEGTGSCLLLGMHQQFDIPATFALHTDCPHYWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGAILPPTTYFEKIQAVLKKYDILFIADEIRGTGLVSGTDFVDNKSPNDPFPPEWGVGAYFGSECRKNGLIVRPAGNNITMAPPFIISPQEVDEIISIYGKALKATEERVKELKAQRSQSVAHEYVILAPFLSRLQSTQASPQREDSGFKGHDMLAPFTTGWQCTNENPLVIERSEGSYVYDTNGRKYLDSLAGLWCTSLGGNEPRLVAAATKQLNTLPFYHSYWNHTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQLPWFNINSSQSYWNIHISGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGAILPPTTYFERIQAVLKKYDILFIADEALSSAYIPIGAVLVSPEISDVIHSQSDKLGIISSSATMVLQIRGTGLVSGTDFVDNKSPNDPFPPEWGVGAYFVAECRKNGLIVRPGGDTITMAPPFIISPQEVDELISIYGKALKATEERVKKLKAQKKVSRERVVLAPFLSRLHGTEASAQKEDSRFKGHDMLAPFTAGWQTTDVSPLIIERSEGSYVYDINGRKYLDSLAGLWCTSLGITICTNTNSCSAYIEKFSFSKLVKAMLEFVGGNEPRLVEAATKQLNVLPFYHSFWNRTTRPSLELAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPDKKKFIARSKALPAMHQKFDIPAPFVLHTDCPHYWRYHLPGETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQPVLKKYDILFIADEGKEYSGARVGAYFGTECQENGMLVRVAGDTIMMSPPFIISPREVDELISIYGEALKATEERVKELKAQKRSFFEK 1662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2568392 2597426 - Cp4.1LG14g02970.1 Cpe14g00413 480797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 1086 1162 - -
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 942 1077 - -
Cpe14g00413 1662 Gene3D Aspartate Aminotransferase, domain 1 607 719 IPR015422 GO:0003824
Cpe14g00413 1662 Gene3D Aspartate Aminotransferase, domain 1 822 934 IPR015422 GO:0003824
Cpe14g00413 1662 Gene3D Aspartate Aminotransferase, domain 1 1178 1295 IPR015422 GO:0003824
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 1593 1652 - -
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 47 209 - -
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 208 258 - -
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 1162 1196 - -
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 841 925 - -
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 375 613 - -
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 1195 1286 - -
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 1086 1162 - -
Cpe14g00413 1662 SUPERFAMILY PLP-dependent transferases 748 917 IPR015424 -
Cpe14g00413 1662 Coils Coil 1269 1296 - -
Cpe14g00413 1662 Coils Coil 1635 1662 - -
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 1162 1196 - -
Cpe14g00413 1662 SUPERFAMILY PLP-dependent transferases 975 1278 IPR015424 -
Cpe14g00413 1662 SUPERFAMILY PLP-dependent transferases 400 711 IPR015424 -
Cpe14g00413 1662 Coils Coil 908 935 - -
Cpe14g00413 1662 Coils Coil 273 293 - -
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 942 1077 - -
Cpe14g00413 1662 Gene3D - 1406 1621 IPR015421 GO:0003824
Cpe14g00413 1662 Gene3D - 210 265 IPR015421 GO:0003824
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 612 725 - -
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 1402 1587 - -
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 1316 1373 - -
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 748 842 - -
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 841 925 - -
Cpe14g00413 1662 SUPERFAMILY PLP-dependent transferases 68 258 IPR015424 -
Cpe14g00413 1662 Gene3D Aspartate Aminotransferase, domain 1 387 522 IPR015422 GO:0003824
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 612 725 - -
Cpe14g00413 1662 Gene3D Aspartate Aminotransferase, domain 1 963 1078 IPR015422 GO:0003824
Cpe14g00413 1662 Gene3D - 114 209 IPR015421 GO:0003824
Cpe14g00413 1662 Gene3D - 1079 1165 IPR015421 GO:0003824
Cpe14g00413 1662 SUPERFAMILY PLP-dependent transferases 1325 1643 IPR015424 -
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 375 613 - -
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 1195 1286 - -
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 1593 1652 - -
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 748 842 - -
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 47 209 - -
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 208 258 - -
Cpe14g00413 1662 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 1316 1373 - -
Cpe14g00413 1662 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 1402 1587 - -
Cpe14g00413 1662 Gene3D Aspartate Aminotransferase, domain 1 1309 1381 IPR015422 GO:0003824
Cpe14g00413 1662 Pfam Aminotransferase class-III 1402 1601 IPR005814 GO:0008483|GO:0030170
Cpe14g00413 1662 Pfam Aminotransferase class-III 777 842 IPR005814 GO:0008483|GO:0030170
Cpe14g00413 1662 Pfam Aminotransferase class-III 1095 1161 IPR005814 GO:0008483|GO:0030170
Cpe14g00413 1662 Pfam Aminotransferase class-III 78 258 IPR005814 GO:0008483|GO:0030170
Cpe14g00413 1662 Pfam Aminotransferase class-III 981 1075 IPR005814 GO:0008483|GO:0030170
Cpe14g00413 1662 Pfam Aminotransferase class-III 406 614 IPR005814 GO:0008483|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00413 K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] - csv:101211530 483.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00555 Cpe-Chr6:3333138 Cpe14g00413 Cpe-Chr14:2568392 3.14E-73 dispersed
Cpe14g00413 Cpe-Chr14:2568392 Cpe12g00762 Cpe-Chr12:6960987 1.02E-10 dispersed
Cpe01g00553 Cpe-Chr1:3189085 Cpe14g00413 Cpe-Chr14:2568392 2.01E-76 wgd
Cpe14g00413 Cpe-Chr14:2568392 Cpe02g00599 Cpe-Chr2:3585502 1.42E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1054 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00530 . . . . Cpe14g00413 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000985 1 3 1 1 1 2 1 4 1 3 2 3 3 5 5 6 3 3 4 3 3 2 2 2 3 4 2 3 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00413 Cpe_Chr14 FPKM 5.048523 0.0 6.00716 8.960722 0.0 5.605834 0.0 4.659647 5.849154 5.754323