Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00416 ATGGATATAGATCTTAGGTTACCTTCTGGTGAGCATGACAAAGATGAAGAACCGAATGGAATTAATAATATGTTGGATGTGGAAGAAAAACTTCATAATGGAGTTATTGAGAGTGGAAATAATATGGTTGATGCTACAGATGGGATGCACGTTGAAGATGGTGGAGATTTAAATTCCCCCATGTTAGACATGGTAATGTTTAAAGAGGACACGAATCTGGAACCACTTCCTGGCATGGAATTTGAATCACACAGTGAAGCATATTCCTTCTATCAGGAATATGCTCGTTCTATGGGATTCAACACAGCAATACAAAATAGCCGCCGTTCAAAGACATCAAGGGAATTTATTGATGCAAAATTTGCATGTTCTCGTTATGGCATGAAGAGAGAGTATGATAAGTCCTTCAATCGTCCACGTGTAAGGCAAACTAAGCAAGAAAGTGAAAATTCAACTGGTCGAAGAGCATGCGCAAAGACAGACTGCAAAGCTAGCATGCACGTAAAGAGGAGGGCGGATGGTAAATGGGTTATACATAGTTTTGTTAAGGAGCATAACCATGAGCTTTTACCTGCTCAAGCTGTCAGTGAACAAACAAGAAAGATGTATGCTGCAATGGCTAGGCAATTTGCTGAATACAAAAATGTTGTAGGACTCAAGAATGACTCGAAGAATCCATTTGACAAAGTTCGCAATTTTGCTTTCGATGCTGGAGATGCAAGGATTTTACTCGACTTTCTTACTCAGNTTAAGAATGACTCGAAGAATCCATTTGACAAAGTGAATTCTGAACCTGATATCATGACTGTTGGAGCACATGATAACTTGCAGCACATGGACAAATTAAGCTCAAGAGCTGTAACCCTTGATGGCTATTTTGGCGCACAGCCAAGCGTGCAAGGAATGGTACAACTGAATTTAATGGCACCGACCCGTGATAATTACTATGGAAATCAACAGGCCATCCAGGGGCTGGGGCAATTAAACTCCATAGCACCTAGCCATGATGGTTATTACCCAGCTCAACCGAGCATTCATGGACTGGGACAAATGGATTTCTTCCGAGCACCAGCTGGTTTCGCCTATGGCATTCGGGACGATCCCAATGTACGAACAACTCAATTGCATGATGATGCATCAAGACATGCATGA 1152 41.58 MDIDLRLPSGEHDKDEEPNGINNMLDVEEKLHNGVIESGNNMVDATDGMHVEDGGDLNSPMLDMVMFKEDTNLEPLPGMEFESHSEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGMKREYDKSFNRPRVRQTKQESENSTGRRACAKTDCKASMHVKRRADGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDSKNPFDKVRNFAFDAGDARILLDFLTQXKNDSKNPFDKVNSEPDIMTVGAHDNLQHMDKLSSRAVTLDGYFGAQPSVQGMVQLNLMAPTRDNYYGNQQAIQGLGQLNSIAPSHDGYYPAQPSIHGLGQMDFFRAPAGFAYGIRDDPNVRTTQLHDDASRHA 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2609955 2614048 + Cp4.1LG14g03040.1 Cpe14g00416 480800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00416 383 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 51 256 - -
Cpe14g00416 383 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Cpe14g00416 383 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 256 322 IPR031052 GO:0006355
Cpe14g00416 383 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 51 256 IPR031052 GO:0006355
Cpe14g00416 383 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 256 322 - -
Cpe14g00416 383 MobiDBLite consensus disorder prediction 1 21 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00416 - - - bhj:120074852 495.738
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00551 Cpe14g00416 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00416 Cpe-Chr14:2609955 Cpe20g00271 Cpe-Chr20:1523117 7.38E-33 dispersed
Cpe14g00416 Cpe-Chr14:2609955 Cpe14g00417 Cpe-Chr14:2618967 3.49E-32 tandem
Cpe01g00551 Cpe-Chr1:3167494 Cpe14g00416 Cpe-Chr14:2609955 4.67E-83 wgd
Cpe14g00416 Cpe-Chr14:2609955 Cpe02g00598 Cpe-Chr2:3580910 7.16E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00656 . . . . . Cpe14g00416 Cpe01g00551 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50503 PF03101 FAR1 5.50E-28 CL0274 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00416 Cpe_Chr14 FPKM 9.580368 12.009579 15.553435 16.434248 11.780305 10.412062 10.849026 32.23848 30.697281 33.696037