Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00420 ATGCCGTCCACCGCCATTTTCTCTCCTTCCTGTTCATCCTCCGCCCCTTTTACTCCCTTCGCTTTTTCACCTTCTTCTTCTTCTTCTTCCAAAGCGTTTTTAGCTGTTACTACTCGGAAGCCATTTGGTTTCCATTTCGCTAATTTGAAGAAGAAATCTCTGTTCTCCAGGAAGAATTTCACCATGGCTGTTTCAATCGAGAAGGAAACCCCCATCGCCGTCCGTCCCGATACGTTCCTTACGGAATACGATGAGGCCACGGGAGGCATCTCTTCCGGCTCCTCGTCGATTAGGGCTCGTTTCGAGAAGATGATTAGGGATGCTCAGGATAGTGTTTGCAAGGCCATTGAGGAAGCGGATGGTGGGGGGAAGTTTAAGGAGGATGTTTGGTCTAGACCTGGTGGTGGCGGCGGTATCAGTAGGGTTCTTCAGGATGGTGCTGTGTGGGAGAAGGCTGGCGTTAATGTCTCGGTTGTGTATGGAGTTATGCCTCCTGATGCTTACAGAGCTGCCAAAGCTGCTGCTGGGGATCACAAGCCTGGGCCTATTCCTTTCTTTGCCGCTGGCATTAGCTCAGTTTTACATCCTAAGAACCCATTTGCACCAACTTTGCATTTCAACTACAGATATTTCGAGACTGATGCTCCTAAAGATGTTCCTGGTGCACCAAGGCAATGGTGGTTTGGTGGTGGGACTGATTTAACTCCTTCTTACATCTTTGAGGAAGATGTCAAGCATTTCCATTCGGTACAAAAAAGTGCTTGTGACAAATTTGATCCATCCTTCTATCCTCGATTCAAAAAATGGTGTGATGACTACTTCTACATCAAGCACCGAGGCGAAAGACGAGGACTTGGAGGAATATTTTTTGATGATCTAAACGACTACGATCAGGAGATGCTTCTATCATTTGCCACCGAGTGTGCCAATTCTGTGGTTTCTGCCTACATACCCATCATAGAGAGAAGAAAGGATACCCCATTTACTGAACAGAACAAAGCATGGCAACAACTGCGCAGGGGCCGCTATGTCGAATTCAACTTGGTTTACGATCGAGGTACTACATTTGGACTGAAAACAGGAGGTCGGATTGAAAGTATTTTAGTTTCTCTTCCTCTAACAGCTAGATGGGAATATGACCATAAACCAGAAGAGGGAAGTGAAGAATGGAAATTACTGGATGCATGCATCAACCCCAAAGAATGGATCTAA 1212 46.2 MPSTAIFSPSCSSSAPFTPFAFSPSSSSSSKAFLAVTTRKPFGFHFANLKKKSLFSRKNFTMAVSIEKETPIAVRPDTFLTEYDEATGGISSGSSSIRARFEKMIRDAQDSVCKAIEEADGGGKFKEDVWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKAAAGDHKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDVPGAPRQWWFGGGTDLTPSYIFEEDVKHFHSVQKSACDKFDPSFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECANSVVSAYIPIIERRKDTPFTEQNKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWI 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2631146 2635326 - Cp4.1LG14g02940.1 Cpe14g00420 480804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00420 403 Pfam Coproporphyrinogen III oxidase 101 402 IPR001260 GO:0004109|GO:0006779
Cpe14g00420 403 PANTHER COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL 34 403 IPR001260 GO:0004109|GO:0006779
Cpe14g00420 403 Gene3D Coproporphyrinogen III oxidase, aerobic 60 403 IPR036406 GO:0004109|GO:0006779
Cpe14g00420 403 SUPERFAMILY Coproporphyrinogen III oxidase 95 403 IPR036406 GO:0004109|GO:0006779
Cpe14g00420 403 PRINTS Coprogen oxidase signature 123 139 IPR001260 GO:0004109|GO:0006779
Cpe14g00420 403 PRINTS Coprogen oxidase signature 140 161 IPR001260 GO:0004109|GO:0006779
Cpe14g00420 403 PRINTS Coprogen oxidase signature 187 211 IPR001260 GO:0004109|GO:0006779
Cpe14g00420 403 PRINTS Coprogen oxidase signature 226 248 IPR001260 GO:0004109|GO:0006779
Cpe14g00420 403 PRINTS Coprogen oxidase signature 263 292 IPR001260 GO:0004109|GO:0006779
Cpe14g00420 403 PRINTS Coprogen oxidase signature 335 362 IPR001260 GO:0004109|GO:0006779
Cpe14g00420 403 PRINTS Coprogen oxidase signature 363 389 IPR001260 GO:0004109|GO:0006779
Cpe14g00420 403 PANTHER BNAA09G50920D PROTEIN 34 403 - -
Cpe14g00420 403 ProSitePatterns Coproporphyrinogen III oxidase signature. 267 291 IPR018375 GO:0004109|GO:0006779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00420 K00228 CPOX, hemF; coproporphyrinogen III oxidase [EC:1.3.3.3] - csv:101209548 669.463
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1101 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00542 . . . . Cpe14g00420 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009248 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00420 Cpe_Chr14 FPKM 6.260605 7.142235 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0