Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00422 ATGGCGCTACATTCATCCGAAAGCCTCGCCGGCGGAGAATCAGTAATCAGAGTTCAAAACTTAGTCGAAGCACAGCCGTCTCAGGTCCCGCCCCAATACATCCAGCCGCCGCATCACCGTCCTTCCGCCACTAGCACTTCCACCGACCTCAGAATTCCGATGAGGACTGCGGCTCTCTCTTTCTTTAGAGATTGTCCCGTCTCTTATAAGCTCGCATACGCTTGCGATCCTAAATCCTTTGCTTCCGAGGGTTATGGCACACAAATGCTCGTCGATAAAGAAGTCGACTCGCAGGCTTCGGCGCTTGACTGGAGAGATTATTTCGATCACCATACGCTGCCGCTTTCACGCCGCAATCTTTCTAATTGGCCTCACTTTCCTTCCGGTTACAGGGAGCTTATGGCTCAGTACAGTGATTGTATGAAATTGCTTGCTCAGCGGCTCCTAGCCGTTATCTCTGAAAGTATTGGGCTGCCTTCGTCGTGGATGGAGGACGCCATCACTGGGATGGGTGGGGAAGAAAATTTTTATCAGAATATTACTGTCAGTTATTACCCTCCATGTCCTCAGCCTGGCTTGACGCTTGGTCTGCAAACCCATTCCGACATTGGCGCCATCACTCTACTAATACAAGATGATGTTGAGGGCCTTCAGGTTCTCAGCGGGCAAGGAGATTGGGTCACTGTTCAGCCTCTGTCTCCTGATGCCATTGTCGTCATTTTGGCCGACCAAACTGAGATTTTAACTAATGGAAAGTGCAAGAGTGCGGAGCATAGAGTGACTACAAACTCTAGCAGGGCAAGACTCTCGATCTCTGCTTTTCATGATCCACCGAAGTCAGTAAAAATATCTCCGGCTGCAGAGCTTGTCAGGAATCACATGCCTCATAGAAGTGCAAGATCATCCTCCCTTATTGAAAAGTCAAGTTTTTTCTTTGCAGCTTCTTCAAGTTCTCCTAAACAAGGTTTGAATTGA 975 48.72 MALHSSESLAGGESVIRVQNLVEAQPSQVPPQYIQPPHHRPSATSTSTDLRIPMRTAALSFFRDCPVSYKLAYACDPKSFASEGYGTQMLVDKEVDSQASALDWRDYFDHHTLPLSRRNLSNWPHFPSGYRELMAQYSDCMKLLAQRLLAVISESIGLPSSWMEDAITGMGGEENFYQNITVSYYPPCPQPGLTLGLQTHSDIGAITLLIQDDVEGLQVLSGQGDWVTVQPLSPDAIVVILADQTEILTNGKCKSAEHRVTTNSSRARLSISAFHDPPKSVKISPAAELVRNHMPHRSARSSSLIEKSSFFFAASSSSPKQGLN 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2636350 2641592 + Cp4.1LG14g03020.1 Cpe14g00422 480806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00422 324 Pfam 2OG-Fe(II) oxygenase superfamily 182 276 IPR044861 -
Cpe14g00422 324 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 175 277 IPR005123 -
Cpe14g00422 324 MobiDBLite consensus disorder prediction 29 48 - -
Cpe14g00422 324 Gene3D - 13 305 IPR027443 -
Cpe14g00422 324 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 53 297 - -
Cpe14g00422 324 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 53 297 - -
Cpe14g00422 324 SUPERFAMILY Clavaminate synthase-like 15 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00422 - - - csv:101209302 474.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00422 Cpe-Chr14:2636350 Cpe01g00129 Cpe-Chr1:746525 4.66E-50 dispersed
Cpe14g00422 Cpe-Chr14:2636350 Cpe08g01226 Cpe-Chr8:8920432 7.27E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00543 . . . . Cpe14g00422 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008598 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00422 Cpe_Chr14 FPKM 6.228843 9.006886 10.300302 9.873527 14.462625 15.285325 12.839221 13.137541 14.86387 12.188006