Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00423 ATGGACGCCATTTCTTCCCCTTTCCTCTCCGGCGGAAACCTCCTCCTCTCTACGCCGATCTCCAAGTCCAGGACCGCCGTTTCGACCGCGATATGCTCTGTACTCGCCGAAGAAACCCCAAGAACCGTTAAAAAACCCGCCTCCCGACCAGATGCTGATTTTCCATCGCCGTCTTTGTCCCAGCGAGCTACTCCCCCTCCGGCGGTGGCGAAGGGCTCTTCCGCCAGACGTGTCGAGCCATCTGTACCGGCGAGCATCTTCAATGCCTTTGATGACTTGATCAACAACTTCATAAACCCGCCGGCGAATCCGTCGACGGATCCACGATACGTCCTTGCTGACAACTTTGCTCCCGTCGACGAGCTTCCACCGACGGAGTGTGATGTCATTCAAGGTTCGTTGCCTTCATCTCTCAATGGTGCGTATATTCGTAACGGCCCGAACCCTCAATACCTTCCCCGTGGGCCCTACCACTTGTTCGACGGCGATGGTATGCTTCACTCTCTTCGAATCTCCAACGGCCGTGCCGTTCTGTGCAGCCGTTATGTGAAAACGTACAAGTACACTTTGGAGCGTGACGCTGGACATCCTGTTATTGTTGGAAAGAGGGATAGTGAGTCCGATTTACCGTATCCAATTCGATTGACTCCAAACGGCGACATTGAAACTCTCGGCCGCCATGATTTTGACGGAAAGCTTTCCATGAGTATGACTGCTCATCCAAAAATCGATTACGATACGGGTGAGGCATTTGCGTTTCGGTATGGTCCTCTGCCTCCGTTCTTAACCTTCTTTCGATTCGACAAGAACGGAGCCAAACAGCCGGATGTGCCGATATTTTCGATGAATCGACCTTCGTTCCTGCACNATAAGAACGGAGCCAAACAGCCCGATGTGCCGATATTTTCGATGAATCGACCTTCGTTCCTGCACGATTTTGCAATTACTAAAAAGTACGCTGTATTTACAGAGATTCAGATCGGATTTAACCCTATGCAAATGATAGTAGAAGGACGCTCTCCAGTTGGAGCAGATCCTTCAAAAATTTCAAGAATAGGACTAATTCCACGATACGCTAACGACGAATCGAAGATGAAGTGGTTTGATGTACCTGGAGTTAACCTGGTTCACGCCATTAACGCTTGGGATGAAGATGACGCTGTGATTCTGGTGGCGCCGAACATTCTTTCCGTCGAACACACGATGGAGAGGATGGATCTGGTTCACGCCTTGGTGGAGAAAATCAGAATCGACCTAAAAACAGGGATAATAACGCGGCGGCCATTGTCGACCAGAAACCTAGACTTCGGAGTGATAAATCCGCTATACGTCGGGAAGAAGAATAGGTTCGTTTACGCCGGCGTTGGAGATCCGATGCCGAAGATTTCGGGAGTTGTGAAGCTCGACGTGTCTCAGGAAGAACGCCGAGACTGTATCGTCGCGACTAGGCTTTTCGGACCTAATTGCTACGGCGGAGAGCCGTTTTTCGTGCCGAGGGAAAGGGAAAATTCCGACGAAACGGCGGCGGAGGAGGACGACGGATATGTCGTCTCGTACGTCCACGATGAAAACTCGGGCGACTCAAGGTTCGTAGTCATGGACGCAAAGTCCCCGGAACTCGAGATTATCGCCACCGTGAAGCTGCCGCGGCGTGTCCCTTACGGCTTTCACGGCTTGTTTGTGAAAGAAAGTGACCTCTCTAAGCTATAA 1710 51.17 MDAISSPFLSGGNLLLSTPISKSRTAVSTAICSVLAEETPRTVKKPASRPDADFPSPSLSQRATPPPAVAKGSSARRVEPSVPASIFNAFDDLINNFINPPANPSTDPRYVLADNFAPVDELPPTECDVIQGSLPSSLNGAYIRNGPNPQYLPRGPYHLFDGDGMLHSLRISNGRAVLCSRYVKTYKYTLERDAGHPVIVGKRDSESDLPYPIRLTPNGDIETLGRHDFDGKLSMSMTAHPKIDYDTGEAFAFRYGPLPPFLTFFRFDKNGAKQPDVPIFSMNRPSFLHXKNGAKQPDVPIFSMNRPSFLHDFAITKKYAVFTEIQIGFNPMQMIVEGRSPVGADPSKISRIGLIPRYANDESKMKWFDVPGVNLVHAINAWDEDDAVILVAPNILSVEHTMERMDLVHALVEKIRIDLKTGIITRRPLSTRNLDFGVINPLYVGKKNRFVYAGVGDPMPKISGVVKLDVSQEERRDCIVATRLFGPNCYGGEPFFVPRERENSDETAAEEDDGYVVSYVHDENSGDSRFVVMDAKSPELEIIATVKLPRRVPYGFHGLFVKESDLSKL 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2646000 2647877 + Cp4.1LG14g02990.1 Cpe14g00423 480807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00423 569 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 58 199 - -
Cpe14g00423 569 Pfam Retinal pigment epithelial membrane protein 210 562 IPR004294 GO:0016702
Cpe14g00423 569 Pfam Retinal pigment epithelial membrane protein 118 199 IPR004294 GO:0016702
Cpe14g00423 569 PANTHER BETA-CAROTENE DIOXYGENASE 291 568 IPR004294 GO:0016702
Cpe14g00423 569 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 291 568 - -
Cpe14g00423 569 MobiDBLite consensus disorder prediction 42 75 - -
Cpe14g00423 569 PANTHER BETA-CAROTENE DIOXYGENASE 206 289 IPR004294 GO:0016702
Cpe14g00423 569 PANTHER BETA-CAROTENE DIOXYGENASE 58 199 IPR004294 GO:0016702
Cpe14g00423 569 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 206 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00423 K09840 NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] - csv:101220226 907.901
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00547 Cpe14g00423 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00423 Cpe-Chr14:2646000 Cpe19g01141 Cpe-Chr19:7662459 1.77E-91 dispersed
Cpe01g00547 Cpe-Chr1:3150152 Cpe14g00423 Cpe-Chr14:2646000 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g972 . . . . . . . . . Cmo16g00546 . . . . . Cpe14g00423 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00501 . . Cpe01g00547 . . . . . . . . . . . . . . . . Csa04g00718 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007169 1 1 3 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00423 Cpe_Chr14 FPKM 11.207729 11.397413 18.219856 11.913325 5.255148 3.48239 9.778639 9.185756 7.641896 8.298478