Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00425 ATGAGTGTAAACGACGCCGTTCTTGCCTACCCTCACAATAACCTCAATAATAATAATAATCTCCACCAGCTTCCCCTCCTCACTGTTACTCTCAAGTTTGAAGAAGTTGTTTACAAAGTGAAATTAGAAGGGAAAGGCGGCGGCGGAGGCGGCGGCTGCTGCGGCGGCGGCGGTTCATGGGGCGGCACTAGAGAAAAAACCATTCTAAACGGAATAAGTGGAGTTGTTTTCCCCGGCGAAATACTCGCCATGCTTGGCCCTTCCGGCAGCGGAAAAACCACCCTTTTGACAGCACTTGGCGGCCGTCTCTCCGGCAAACTCTCCGGCAAAATCACTTACAATGGACACCCATTTTCCGGCGCTACCAAGCGCCGGACCGGCTTCGTCGCCCAAGATGACGTTTTATACCCTCATTTAACCGTCGCCGAAACCCTTCTCTTCACCGCCCTCCTCCGCCTTCCCTCCTCCCTTACTGCCGACGAAAAAGCCCAAGCCGTTGAACGAGTCATCTCCGAGTTGGGTCTCACTCGCTGCCGCAACAGCATGATCGGCGGCCCACTTTTCCGGGGAATCTCCGGCGGAGAGAAAAAAAGAGTCAGTATCGGTCAAGAGATGCTGATTAACCCTAGCTTGCTTTTGCTCGACGAACCCACCTCCGGTTTAGACTCCACAACCGCCATGAGAATCATCACCACCGTTAAACGCCTCGCCGCCGGCGGTCGGACAGTTGTCACGACAATTCATCAGCCGTCCAGCCGCCTTTACCACATGTTTGATAAGGTTGTTTTGCTGTCGGAAGGCAGCCCAATTTATTACGGCGCAGCTTCAACCGCCATGGATTATTTCTCCTCCATTGGATTCTCTACCTCCATTACCATCAATCCAGCTGATCTCCTTCTCGATCTTGCAAATGGAATCGGCCCTGATTCGAAATATGCAAACGACGGAGGAGAGAACATGGAACAAGAACAAAAGGGTGTGAAAGAAGCCCTAATTTCAGCTTATGATAAGAACATTTCCTCCACATTGAAGGATGAGCTTTGTAGTTTGGATGCTAATAACTTCACTAACTATGCAAAAGATGCCTCAAAGAGAGAGAGGAGATCAAGAGAAGAGTGGTGCACGAGCTGGTGGTATCAATTCAGAGTGCTATTGCAAAGAGGGCTAAAGGAGAGAAGGTATGACGCCTTCAACAAGCTAAGGATCTTTCAAGTCATAAGTGTAGCCATTCTTGGTGGACTCCTTTGGTGGCACACTCCGACATCCCACATCGAAGATCGTATAGCGTTGTTGTTCTTCTTCTCCGTCTTTTGGGGCTTCTACCCGCTCTACAACGCCGTATTCACCTTCCCACAAGAACGCACCATGCTAATCAAAGAGCGATCCTCTGGCATGTACCGTCTCTCCTCCTACTTCCTCGCACGAACCATCGGTGACCTTCCTTTAGAACTCGCTCTCCCAACCGCCTTCGTTTTCATAATCTACTTCATGGGTGGCCTCAACCCTCACCCTCCCACCTTCCTCCTCTCCCTCCTCATCGTCCTCTATAGCGTCCTCGTCTCGCAGAGCCTCGGCTTGGCATTCGGTGCCATTCTCATGGATGTCAAGCAAGCCACGACGCTCGCCTCCGTCACGACGCTCGTCTTCCTCATCGCTGGTGGCTACTACATTCAACAAATTCCTCCGTTCATTGTGTGGCTTAAGTATCTCAGCTATAGCTTCTATTGCTACAAGCTTCTGTTGGGTGTGCAGTACAAAAACGACGACGTTTATGAGTGTGGGAAAGGGGAGTTTTGTCGGGTGGCGGATTTTCCGGCGGTTAAGTCGGTCGGGTTGGACCGGCTTTGGGTTGATGTTTGTATTATGGCGCTCATGCTGGTTGGGTATCGGCTGGTTGCTTTCTTGGCTCTTCATAGGGTGAGATTGAGATGA 1932 50.93 MSVNDAVLAYPHNNLNNNNNLHQLPLLTVTLKFEEVVYKVKLEGKGGGGGGGCCGGGGSWGGTREKTILNGISGVVFPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGHPFSGATKRRTGFVAQDDVLYPHLTVAETLLFTALLRLPSSLTADEKAQAVERVISELGLTRCRNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAMRIITTVKRLAAGGRTVVTTIHQPSSRLYHMFDKVVLLSEGSPIYYGAASTAMDYFSSIGFSTSITINPADLLLDLANGIGPDSKYANDGGENMEQEQKGVKEALISAYDKNISSTLKDELCSLDANNFTNYAKDASKRERRSREEWCTSWWYQFRVLLQRGLKERRYDAFNKLRIFQVISVAILGGLLWWHTPTSHIEDRIALLFFFSVFWGFYPLYNAVFTFPQERTMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYFMGGLNPHPPTFLLSLLIVLYSVLVSQSLGLAFGAILMDVKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSFYCYKLLLGVQYKNDDVYECGKGEFCRVADFPAVKSVGLDRLWVDVCIMALMLVGYRLVAFLALHRVRLR 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2654343 2658455 - Cp4.1LG14g02950.1 Cpe14g00425 480809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00425 643 Pfam ABC-2 type transporter 379 585 IPR013525 GO:0016020|GO:0140359
Cpe14g00425 643 Gene3D - 59 285 IPR027417 -
Cpe14g00425 643 Pfam ABC-2 type transporter 248 310 IPR043926 GO:0140359
Cpe14g00425 643 Pfam ABC transporter 69 219 IPR003439 GO:0005524
Cpe14g00425 643 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 26 639 - -
Cpe14g00425 643 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 31 291 IPR003439 GO:0005524
Cpe14g00425 643 SMART AAA_5 78 268 IPR003593 -
Cpe14g00425 643 CDD ABCG_EPDR 66 273 - -
Cpe14g00425 643 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 26 639 - -
Cpe14g00425 643 ProSitePatterns ABC transporters family signature. 191 205 IPR017871 GO:0005524
Cpe14g00425 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 285 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00425 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101219742 1131.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00545 Cpe14g00425 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01375 Cpe-Chr1:8263886 Cpe14g00425 Cpe-Chr14:2654343 0 dispersed
Cpe02g00910 Cpe-Chr2:6679039 Cpe14g00425 Cpe-Chr14:2654343 0 dispersed
Cpe03g00333 Cpe-Chr3:1734145 Cpe14g00425 Cpe-Chr14:2654343 0 dispersed
Cpe06g00903 Cpe-Chr6:6175733 Cpe14g00425 Cpe-Chr14:2654343 0 dispersed
Cpe08g00945 Cpe-Chr8:7422562 Cpe14g00425 Cpe-Chr14:2654343 6.22E-176 dispersed
Cpe13g00026 Cpe-Chr13:215796 Cpe14g00425 Cpe-Chr14:2654343 0 dispersed
Cpe14g00425 Cpe-Chr14:2654343 Cpe14g00687 Cpe-Chr14:4512022 0 dispersed
Cpe05g01019 Cpe-Chr5:6646097 Cpe14g00425 Cpe-Chr14:2654343 1.66E-08 transposed
Cpe14g00776 Cpe-Chr14:6113840 Cpe14g00425 Cpe-Chr14:2654343 5.65E-173 transposed
Cpe01g00545 Cpe-Chr1:3141466 Cpe14g00425 Cpe-Chr14:2654343 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g968 . . . . . Bpe07g00048 . . Cmo06g00554 Cmo16g00550 . . . . . Cpe14g00425 . . . . . . . . . . . . . . . . . . Cone9ag0341 . . . . . . . . . . . Bma12g00629 . . . Cma06g00550 Cma16g00503 Car06g00489 . Cpe01g00545 . . . . . . . . . . . . . . . . Csa04g00716 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00425 Cpe_Chr14 FPKM 0.779839 1.235649 0.340779 0.329357 0.568988 0.453119 0.208321 0.416448 0.97697 0.80603