Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00434 ATGTCTCTTCCTCTGTGTTTGATGAAGAAGATGGCCAGAGAGAACTTCGGTTTATGGCTATTTTTGGTTGCATCTCTGCAGTTTTTCCTTAGAACACAGTGTATTAATGTGGGGATTACTTATGTTCAAGAAGCTGGTATCAAAGGAGGCGTTTGTTTGGATGGAAGTCCTCCAGCGTATCATTTCAGCGAAGGGTTCGGCGCTGGGATCGATAATTGGTTGATACAACTCGAGGGAGGAGGATGGTGCAACAATGTCACGACCTGTCTCCAACGCAGGGACACTCGTTTAGGCTCGTCTAGGAAAATGGTTACAGTTCTTGCGTTCTCGGGGATTTTGAGCAATAAACAAAAATTCAATCCAGGTTTGGCCTTAGATGAACAATATGATTTGATTGATCGGTTCACTCTTTATCTCAATTATACCAACAATTCTTCCACGCCACAGATTTTTATAACTGGAACAGAATCAAGGTTCGGTACTGTGATGGATCTTCTTTCACTGGAGATGTTGAAGCGGTTGATCCTTGATGAATCTTTGGACCAGGCTACCAATCTGCATTTCAGAGGAGCAAGAGTTTTTCGTGCTATCATTGATAACTTACTCGCCAAAGGAATGAAGAATGCGAAGAACGCTATTCTCTCCGGTTGTTCCGCGGGCGGATTAAGTTCGATTTTGAATTGTGATCATTTCAAATCTCTACTTCCTTCTACTACTAAACACATCGCGGACTTCTACAGCGACGTAGTTGCTACCCATGCTTCTGCTAAGAATTTGCCTATATCATGCACATCAAAAATGAAACCAGAGATGTGCTTCTTTCCCCAAAACGTGGTTCAGCTCATTCAGACACCAATATTTCTTGTAAATGCAGCCTATGATTCATGGCAGATCAAGAACATACTGGCGCCCGGCGTCGCCGATCCGCACGGTACTTGGCACAGCTGCAAGCTCGACATCAAGAACTGCTCGCCTATTCAGCTACGAACCATGCAAGGTAGTAGAACATCAAGCTCAGCAGTCTTCAAACTGTTTGAGAAAGTGTTTTATTCTAATCTTTCTGGTTTTGGATTAGATTTCAGGGTTCAGTTCTTGAGTGCATTGAATGGCGTTGGAAGTTCTTTATCTAGAGGATTGTTCATAGATTCTTGCTATGCTCATTGCCAAACCGAAACGCAGGAGACATGGCTACGAGCAGACTCTCCCACGCTGAGTAAGACGACCATTGCAAAGGCAGTTGGAGACTGGTATTTCGACCGGAGTCCGTTCCAGAAGATCGATTGTCCTTACCCGTGCAACCCGACATGCCACAACCGCATTTTCGAAGCGAAAGACAACCTCGAATGA 1347 44.32 MSLPLCLMKKMARENFGLWLFLVASLQFFLRTQCINVGITYVQEAGIKGGVCLDGSPPAYHFSEGFGAGIDNWLIQLEGGGWCNNVTTCLQRRDTRLGSSRKMVTVLAFSGILSNKQKFNPGLALDEQYDLIDRFTLYLNYTNNSSTPQIFITGTESRFGTVMDLLSLEMLKRLILDESLDQATNLHFRGARVFRAIIDNLLAKGMKNAKNAILSGCSAGGLSSILNCDHFKSLLPSTTKHIADFYSDVVATHASAKNLPISCTSKMKPEMCFFPQNVVQLIQTPIFLVNAAYDSWQIKNILAPGVADPHGTWHSCKLDIKNCSPIQLRTMQGSRTSSSAVFKLFEKVFYSNLSGFGLDFRVQFLSALNGVGSSLSRGLFIDSCYAHCQTETQETWLRADSPTLSKTTIAKAVGDWYFDRSPFQKIDCPYPCNPTCHNRIFEAKDNLE 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2728315 2731574 - Cp4.1LG14g02810.1 Cpe14g00434 480818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00434 448 Pfam Pectinacetylesterase 238 345 IPR004963 GO:0016787
Cpe14g00434 448 Pfam Pectinacetylesterase 33 122 IPR004963 GO:0016787
Cpe14g00434 448 Pfam Pectinacetylesterase 359 422 IPR004963 GO:0016787
Cpe14g00434 448 PANTHER NOTUM-RELATED 178 240 IPR004963 GO:0016787
Cpe14g00434 448 PANTHER NOTUM-RELATED 238 337 IPR004963 GO:0016787
Cpe14g00434 448 PANTHER PECTIN ACETYLESTERASE 178 240 - -
Cpe14g00434 448 PANTHER PECTIN ACETYLESTERASE 238 337 - -
Cpe14g00434 448 PANTHER PECTIN ACETYLESTERASE 17 123 - -
Cpe14g00434 448 PANTHER PECTIN ACETYLESTERASE 359 441 - -
Cpe14g00434 448 PANTHER NOTUM-RELATED 17 123 IPR004963 GO:0016787
Cpe14g00434 448 PANTHER NOTUM-RELATED 359 441 IPR004963 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00434 K19882 NOTUM; O-palmitoleoyl-L-serine hydrolase [EC:3.1.1.98] - csv:101214431 642.499
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00534 Cpe14g00434 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00105 Cpe-Chr14:581138 Cpe14g00434 Cpe-Chr14:2728315 3.57E-97 dispersed
Cpe14g00434 Cpe-Chr14:2728315 Cpe19g00352 Cpe-Chr19:3082172 9.85E-101 dispersed
Cpe01g00534 Cpe-Chr1:3073852 Cpe14g00434 Cpe-Chr14:2728315 7.19E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g937 Blo02g01173 . . Bda08g00443 Bpe05g00716 Bpe07g00051 . . . Cmo16g00560 . . . . . Cpe14g00434 . . . . . . . . . . . . . . . . . Cone6ag0883 Cone9ag0887 . . . . . . . . . . Bma05g00898 Bma12g00626 . . . . Cma16g00513 . . Cpe01g00534 . . . . . . . . . . . . . . . . Csa04g00705 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003918 1 3 0 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 8 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00434 Cpe_Chr14 FPKM 29.259586 30.887245 0.0 0.0 0.539434 0.614155 0.45723 0.0 0.0 0.0