Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00440 ATGAAGGAATCCAAGCCATGGCGCCCTTTCGCCGCCAATTGCTGCTCCGCCGACGACCAGACCGCCTTCGGCAACTTCAGCCGCTGCCGCCCCAACCGCTCTGATTTCTCCAAGAACATCGCTCCTTTGCCGTCGTTCCGGCGGCTCTCCTTTTCCGATCTCAGCCGGTCCTCTTCGATTCGATTGAACGAGGATCTTGCGGCGTCGTTTGGGGCTGATTTGTTTGACTTTCAGTTGAGTGAGTTACGTGCCATTACTCAGAATTTCTCCAGCAATTTCTTGTTGGGAGAAGGGGGATTCGGCCGAGTTCATAAGGGCTATGTCGATGAGAACTTTCGGACTGGGCTTAGGGCTCAGGCCGTCGCTGTGAAGCTTCTCGATAACCAAGGCTTGCAGGGCCACCGTGAATGGCTTGCTGAAGTAGTGTTTCTTGGGCAGCTAAGGCATCCAAATCTGGTAAAATTGATAGGCTATTGCTGTGAAGAAGAAGAGAGGCTTCTTGTTTATGAGTTCTTGCCCAGAGGCAGCTTGGAAAACCACTTATTCAAAAGGCTTTCTATCTCGTTGCCATGGACGACGAGGCTCAAAATCGCCGTCGGAGCAGCGAAGGGCCTCGACTTCCTTCATGGGGCAGAGAAGCCTGTCATTTACAGAGACTTCAAAACCTCCAATGTCCTGTTAGACTCGTCTTGTCTAAACACTAATGCGGGTTGCGGTCTGATGTTTATCTTAGGGCACTTGACAACCAAAAGCGACGTGTACAGTTTCGGAGTGGTACTTTTGGAGCTTCTCACAGGAAGAAGAGCAATGGACAAATCAAGAGCAAAGAATGACCAAAACCTTGTGGATTGGGCAAAGCCATATCTCAATAGCTCTCGCAGGTTGCACTTCATAATGGACCCAAGGCTTTGTGGGCAGTATTCTGTGAAAGGGGCAAAGGGAATGGCCAGTCTAGCCCTCCAATCCACAAGCTTGAACCCTAAAGACAGACCTAGAATGCCAGCCATTGTCGAAGCTCTTGAAGGCCTTCTTCAGTTCAAGGACATGGCTGTTACATCCGGCCACTGGTCTGCCTCTGCATCGCCCAAACATGCCAGAAATGGCGTATCTGCTAAGGCCAAAACCGAGACAGGACGAGGAAATCTCTCTAGATCTCAGGCTGCCGTGAGCCATGGATGA 1179 50.89 MKESKPWRPFAANCCSADDQTAFGNFSRCRPNRSDFSKNIAPLPSFRRLSFSDLSRSSSIRLNEDLAASFGADLFDFQLSELRAITQNFSSNFLLGEGGFGRVHKGYVDENFRTGLRAQAVAVKLLDNQGLQGHREWLAEVVFLGQLRHPNLVKLIGYCCEEEERLLVYEFLPRGSLENHLFKRLSISLPWTTRLKIAVGAAKGLDFLHGAEKPVIYRDFKTSNVLLDSSCLNTNAGCGLMFILGHLTTKSDVYSFGVVLLELLTGRRAMDKSRAKNDQNLVDWAKPYLNSSRRLHFIMDPRLCGQYSVKGAKGMASLALQSTSLNPKDRPRMPAIVEALEGLLQFKDMAVTSGHWSASASPKHARNGVSAKAKTETGRGNLSRSQAAVSHG 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2753742 2756350 - Cp4.1LG14g02820.1 Cpe14g00440 480824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00440 392 PANTHER SERINE/THREONINE-PROTEIN KINASE, ACTIVE SITE PROTEIN-RELATED 245 377 - -
Cpe14g00440 392 PANTHER SERINE/THREONINE-PROTEIN KINASE, ACTIVE SITE PROTEIN-RELATED 28 231 - -
Cpe14g00440 392 MobiDBLite consensus disorder prediction 355 392 - -
Cpe14g00440 392 ProSitePatterns Protein kinases ATP-binding region signature. 95 124 IPR017441 GO:0005524
Cpe14g00440 392 Gene3D Transferase(Phosphotransferase) domain 1 172 235 - -
Cpe14g00440 392 SUPERFAMILY Protein kinase-like (PK-like) 74 341 IPR011009 -
Cpe14g00440 392 Pfam Protein tyrosine and serine/threonine kinase 95 230 IPR001245 GO:0004672|GO:0006468
Cpe14g00440 392 PANTHER OS01G0588500 PROTEIN-RELATED 245 377 - -
Cpe14g00440 392 Gene3D Phosphorylase Kinase; domain 1 53 171 - -
Cpe14g00440 392 ProSiteProfiles Protein kinase domain profile. 89 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe14g00440 392 PANTHER OS01G0588500 PROTEIN-RELATED 28 231 - -
Cpe14g00440 392 MobiDBLite consensus disorder prediction 374 392 - -
Cpe14g00440 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Cpe14g00440 392 Gene3D Transferase(Phosphotransferase) domain 1 236 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00440 - - - csv:101211537 684.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00599 Cpe-Chr9:4149804 Cpe14g00440 Cpe-Chr14:2753742 1.14E-30 dispersed
Cpe14g00440 Cpe-Chr14:2753742 Cpe05g00923 Cpe-Chr5:6065716 3.17E-97 dispersed
Cpe14g00440 Cpe-Chr14:2753742 Cpe09g00153 Cpe-Chr9:892403 9.90E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g928 Blo02g01169 . . . . . . . . Cmo16g00566 . . . . . Cpe14g00440 . . . . . . . . . . . . . . . . . Cone6ag0878 Cone9ag0883 . . . . . . . . . . . . . . . . Cma16g00520 . . . . . . . . . . . . . . . . . . . Csa04g00698 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012115 0 1 1 0 0 0 1 0 0 1 1 0 1 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 12
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62832 PF07714 PK_Tyr_Ser-Thr 1.40E-24 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00440 Cpe_Chr14 FPKM 1.310178 1.207982 2.314717 2.481972 1.358515 1.616129 1.19657 0.0 0.19553 0.0