Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00442 ATGGCGGCCATTTCAATCTTCTTCTATTTCTTACTTTTTTCCTTCTCCGTAGCAGCCACCGGTCGCGGTGGTGGAAATGGCTTCACCACCTCTATAATCCACCGTGATTCCCTTCTCTCTCCTCTCCACAACCCATCTGTCTCCCACTACGAACGGCTTACCGGTGCCTTCAACCGCTCTTTCTCCCGTTCCACCACCCTCACCAATCGGGCCGCCACCGTCTCTACTGGCGGCGTTCATTCTCCGCTCATACCTGACAGCGGCGAGTTCTTAATTTCCCTCTCTATTGGAACCCCGCCGGTGGATTTCACCGCCATCGCCGACACTGGCAGTGACCTGACGTGGACACAGTGTTTGCCATGTGTCAAATGCTTCAACCAATCAAGTCCCATTTTTAATCCACATCGATCATCCTCTTATAGCAACGTGTCTTGCACGTCTGATACTTGCAACTCCATCGTCAGCCACCGTTGTGGTCCCGACCTCAAAACCTGCACCTATGGCTACAGCTACGGAGACCAATCCTTCACGTATGGTGACCTGGCATATGAGAAAATTACCATTGGGTCCTTCAAACTCAACAAGGTAGTCATTGGATGCGGCCACGAAAATGGCGGCACTTTCCTCGGAGAGACCTCGGGGATCGTCGGACTCGGCGGCGGCCCTCTCTCTTTGGTTTCACAACTGAACACAATTGCCGCCGTCAAACGGCAGTTCTCGTATTGCTTGCCGACATTCTTCAGTGACGGGAATATCACAGGCAAAATAAGCTTCGGTGAAGAAGCTGCCGTGTCGGGGCGAAAAGTCGTTTCTACCCCTCTCGTGCAGAAACATCCCTACACATACTATTTCTTGACTCTTGAAGCGGTCTCGGTTGCTAACAAGCGATTTGAGGTTGCAAACAACATGTCGTCTGCAGTAGTAGAAGGGAATATCATTATTGATTCCGGTACGACATTGACACTTTTGCCCCCGAATTTGTACGACGGTATCGTTTCGACTTTGGCGAGGGTTGTAAAAGCGAAGCGGGTGAATGATCCATCTGGGATTTTGGAACTCTGCTATGGTGTGAGCAGCATTGACGACTTGAATATTCCGATCATCACGGCACATTTTGCTGGTGGCGCCGCTGTGGAATTGCAACCGGAGAATACGTTTGCTTTGGTAAATGAAGATGTGGCTTGTTTGACTTTGGCACCGGCGAAGAAATTTGCCATTTTTGGGAACTTGGCGCAGGTTAACTTTTTAGTCGGATATGATCTGGAGCAGAAGACAGTGTCGTTTAAACGTACTGTTTGTGGTTAG 1305 49.96 MAAISIFFYFLLFSFSVAATGRGGGNGFTTSIIHRDSLLSPLHNPSVSHYERLTGAFNRSFSRSTTLTNRAATVSTGGVHSPLIPDSGEFLISLSIGTPPVDFTAIADTGSDLTWTQCLPCVKCFNQSSPIFNPHRSSSYSNVSCTSDTCNSIVSHRCGPDLKTCTYGYSYGDQSFTYGDLAYEKITIGSFKLNKVVIGCGHENGGTFLGETSGIVGLGGGPLSLVSQLNTIAAVKRQFSYCLPTFFSDGNITGKISFGEEAAVSGRKVVSTPLVQKHPYTYYFLTLEAVSVANKRFEVANNMSSAVVEGNIIIDSGTTLTLLPPNLYDGIVSTLARVVKAKRVNDPSGILELCYGVSSIDDLNIPIITAHFAGGAAVELQPENTFALVNEDVACLTLAPAKKFAIFGNLAQVNFLVGYDLEQKTVSFKRTVCG 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2761556 2762860 + Cp4.1LG14g02710.1 Cpe14g00442 480826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00442 434 Gene3D Acid Proteases 259 434 IPR021109 -
Cpe14g00442 434 Pfam Xylanase inhibitor C-terminal 283 429 IPR032799 -
Cpe14g00442 434 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 7 433 - -
Cpe14g00442 434 ProSiteProfiles Peptidase family A1 domain profile. 90 429 IPR033121 -
Cpe14g00442 434 CDD pepsin_A_like_plant 89 433 IPR034161 -
Cpe14g00442 434 SUPERFAMILY Acid proteases 85 433 IPR021109 -
Cpe14g00442 434 Gene3D Acid Proteases 71 258 IPR021109 -
Cpe14g00442 434 PANTHER OS07G0603500 PROTEIN-RELATED 7 433 - -
Cpe14g00442 434 Pfam Xylanase inhibitor N-terminal 90 259 IPR032861 -
Cpe14g00442 434 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 312 323 IPR001969 GO:0004190|GO:0006508
Cpe14g00442 434 PRINTS Pepsin (A1) aspartic protease family signature 96 116 IPR001461 GO:0004190|GO:0006508
Cpe14g00442 434 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00442 - - K01381 cmax:111483445 816.994
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00529 Cpe14g00442 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00530 Cpe-Chr1:3043619 Cpe14g00442 Cpe-Chr14:2761556 7.36E-32 dispersed
Cpe01g01706 Cpe-Chr1:11306997 Cpe14g00442 Cpe-Chr14:2761556 1.03E-151 dispersed
Cpe12g00044 Cpe-Chr12:231019 Cpe14g00442 Cpe-Chr14:2761556 9.52E-14 dispersed
Cpe14g00442 Cpe-Chr14:2761556 Cpe17g00289 Cpe-Chr17:1920828 1.34E-52 dispersed
Cpe01g01739 Cpe-Chr1:12240187 Cpe14g00442 Cpe-Chr14:2761556 2.83E-31 transposed
Cpe10g01150 Cpe-Chr10:8313299 Cpe14g00442 Cpe-Chr14:2761556 3.42E-07 transposed
Cpe17g00351 Cpe-Chr17:2496532 Cpe14g00442 Cpe-Chr14:2761556 0 transposed
Cpe20g00698 Cpe-Chr20:5521604 Cpe14g00442 Cpe-Chr14:2761556 3.33E-67 transposed
Cpe01g00529 Cpe-Chr1:3040921 Cpe14g00442 Cpe-Chr14:2761556 2.54E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g925 Blo02g01168 . . . . . . . . Cmo16g00568 . . . . . Cpe14g00442 . . . . . . . . . . . . . . . . . Cone6ag0876 . . . . . . . . . . . . . . . . . Cma16g00522 . . Cpe01g00529 . . . . . . . . . . . . . . . . Csa04g00694 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001637 0 2 1 0 0 2 0 3 2 3 1 2 4 3 2 6 2 1 5 3 3 1 3 5 6 2 2 4 3 0 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00442 Cpe_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0