Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00446 ATGCGGGTCAAAGTCATGGTCGTGTTGCTCGTCGAGCTCGTCTTCATCACGCTCCTCACCCTTCTCGTTATGCTCATCTTTCATACTCATACCAAACGATCCATGGTGGTTGGAACGATCTGCATTCTCTTTAACATCGGCATGTATGCTTCTCCATTGGCAGTCATGAAATTGGTGATTAAAACAAAGAGCGTGGAGTATATGCCTCTATCCCTCTCCGTTGCTTCTTTTGCCAATGGAAGCCTTCTAGTCATCACCATTAACGGAGCTGGAATCCTAATCGAGTTGACTTATATAATCCTCTTCTTCGTCTTCTCCAACCGGAAGATGCGGGTCAAAGTCATGGTCGTGTTGCTCGTCGAGCTCGTCTTCATCACGCTCCTCACCCTTCTCGTTATGCTCATCTTTCATACTCATACCAAACGATCCATGGTGGTTGGAACGATCTGCATTCTCTTTAACATCGGCATGTATGCTTCTCCATTGGCAGTCATGAAATTGGTGATTAAAACAAAGAGCGTGGAGTATATGCCTCTATCCCTCTCCGTTGCTTCTTTTGCCAATGGTGTGGCTTGGACTATTTATGCTTGCCTCCCGTTTGACCCTTATATTTTGATTCCAAATGGGCTGGGCACACTGTTTGGGCTGGCCCAATTGATACTCTATGCCAGCTTTTACAAATCAACGAAGCTCCAAATTGAAGAAAGGGAAGCTAAAGGGCAGGTGATTTTATCAGAGGTGGTCACCAATGGGAAAGTCTTAGAAGAAAGACAGCATTGA 780 45.38 MRVKVMVVLLVELVFITLLTLLVMLIFHTHTKRSMVVGTICILFNIGMYASPLAVMKLVIKTKSVEYMPLSLSVASFANGSLLVITINGAGILIELTYIILFFVFSNRKMRVKVMVVLLVELVFITLLTLLVMLIFHTHTKRSMVVGTICILFNIGMYASPLAVMKLVIKTKSVEYMPLSLSVASFANGVAWTIYACLPFDPYILIPNGLGTLFGLAQLILYASFYKSTKLQIEEREAKGQVILSEVVTNGKVLEERQH 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2788064 2791722 + Cp4.1LG14g02740.1 Cpe14g00446 480830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00446 259 PANTHER RAG1-ACTIVATING PROTEIN 1 3 80 - -
Cpe14g00446 259 PANTHER RAG1-ACTIVATING PROTEIN 1 80 250 - -
Cpe14g00446 259 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 3 80 - -
Cpe14g00446 259 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 80 250 - -
Cpe14g00446 259 Gene3D - 142 239 - -
Cpe14g00446 259 Gene3D - 28 112 - -
Cpe14g00446 259 Pfam Sugar efflux transporter for intercellular exchange 145 229 IPR004316 GO:0016021
Cpe14g00446 259 Pfam Sugar efflux transporter for intercellular exchange 36 109 IPR004316 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00446 K15382 SLC50A, SWEET; solute carrier family 50 (sugar transporter) - csv:101207440 288.885
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00446 Cpe-Chr14:2788064 Cpe20g00233 Cpe-Chr20:1338736 1.38E-25 dispersed
Cpe14g00446 Cpe-Chr14:2788064 Cpe13g00101 Cpe-Chr13:732064 6.31E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g192 Blo02g01164 Blo03g00262 Bda06g00166 . Bpe05g00709 Bpe07g00056 . . . Cmo16g00576 Cma02g00918 . . . . Cpe14g00446 . . . . . . . . Cla07g01079 Cam07g1421 Cec07g1235 Cco07g1215 Clacu07g1140 Cmu07g1122 Cre07g1499 . . Cone6ag0871 Cone9ag0877 . . . Cme07g01522 . . . . . . . Bma12g00622 . Cmo02g00925 . . Cma16g00527 . . . . . . . . . . . . . . . . . . . Csa04g00685 Chy07g01124 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002194 2 2 2 1 2 2 0 2 2 2 2 2 4 2 2 5 2 2 4 2 2 2 2 2 1 2 2 3 3 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00446 Cpe_Chr14 FPKM 0.0 1.178406 0.0 0.0 1.170066 1.045816 1.125173 0.626105 0.521497 0.168751