Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00447 ATGACCGAGCCCGATTCCAATCACCCCTCCACCCTTTTCCCCAAATCCACCCACCGTTCCGTCCCCGACGACCGGACCCAGCTCATGGATTTCGATCTCGACTTGGACTTCCCTTGGCCCTTGGATCAAATCCCTTCATTCGCTTCCAACCCCATGTCCCCTTTTCTCGTTTCCACCTCCGATCATCTNGACTTGGACTTCCCTTGGCCCTTGGATCAAATCCCTTCATTCGCTTCCAACCCCATGTCCCCTTTTCTCGTTTCCACCTCCGATCATCTCGGTTCCCCTCTCTGGGCCTTCTCCGAACCCGACGACGACGACGATTCCAAGTTTCCTGCCTCTACCTGCTCTGTTCTTGGTACTTCCAATTCCAATTCTGTACCACAAAAGCCGTCCGAGAATCACAAGTTTAAAATTCTTCCAGTTCAATCTTCATCATGGGGACTAATCCCATCGGAGAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGATACATTAAGGAATCCTCCGACCAGCATGTTCTAGCTCAGGTTTGGGCGCCCGTAAAAAGTGGTGGCAAGCTTGTACTTTCAACTTCTGGCCAACCCTTCGTCCTTGATTCACAGAGCAATGGACTTCATCAGTATAGGATGGCCTCTTTGACTTTTATGTTTTCTTTGGAGCCCGACCAGGATGGATATCTTGGTCTCCCTGGTCGTGTTTTCCAGCAAAAGTTGCCTGAATGGACTCCAAATGTGCAGTATTACTCAAGCAAGGAGTACCCTCGACTTAGTCATGCTCTTCACTACAATGTTCAAGGAACTTTGGCTTTGCCTGTTTTCGACCCATCCGGGCACTCTTGTCTCGGTGTTCTTGAGCTTATTATGACCTCACCAAAGATCAATTATGCACCTGAGGTGGACAAAGTCTGCAAAGCTCTTGAGGCTGTGAATCTAAAAAGTTCAGAGATTTTGGATCATCCAAATAATCAGATACATACTTCGCAATGCTTTTCAAACCAGATTTGCAACGAAGGTCGACAGAATGCACTGGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCGTGCAGGCACCGAAATGTGCTCGCTTACGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATTTGTATGTCTGCAACCGAAGTAGCATCGTATGTTGTCGATGCTCACATGTGGGGTTTTCGTGACGCATGTTTAGAACATCATTTACGAAAGGGTCAAGGTGTTTCTGGGAGAGCGTTTTTATCCCACAGCTCATGTTTTTGTGGAGACATCACTCAATTCTCCAAGACTGAGTACCCTTTGGTACATTATGCACTCATGTTTGGATTAAAGAGCTGTTTTTCGATCTGTTTACGAAGCACGTTTACTGGAGACGATGAGTACATTCTAGAGTTTTTCCTGCCACCGAGTATTGTCGATTATCAGGAACAAAAGACTTTGTTGGGTGCATTGATGGCAACAATGAAGCAGCATTTCTACACTCTCAAAGTTGCTTCTGGAATCAACCTTGAGGACGAGGAAGGACTTGTCGAGATCATTCAAGTGTCGAGAAATGGAGGATTCGAGTCGAGAATTGAATATATTCAAATTCCTCGACCTATGGAATTGCCTCCTCACTCTGATGCCATGCCAAATGCAGGAGAGGTAGTTGCATTAGAAAAGCTGCAGCAGCAATCTTTAATGGTTCATGATACTCCAAAGGACGAAAACAATAGCGCTCGGGACGACGAAAGCCACAACCCTGCTCCTTGTCCACAGAGTAAGGAAGTAAAAAAGACGTCGGAAAGAAAGCGTGGAAAAGCTGAGAAATCGATTAGTCTTGAGGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCGACGACAATGAAGCGTATCTGTAGGCAACACGGGATTTCACGGTGGCCATCTCGGAAAATCAACAAGGTCAATCGTTCACTTTCAAAACTAAAGCGCGTAATTGAATCGGTTCAAGGAGCCGAAGGAGCATTCGGTATATCATCTCTAGCTACGAGTCCTCTTCCTGTTACCGTTAGTTCGAGTTCTCATCCTTTAACTCCGGAAGGGTCTAATCAGCAAAACTTTGTTGCTTCCCAACCATCTGATCCACAATATAAAGAAACGAACACCTCGGAAGGACAGACAATCGACACATGGGCTAGATTGGAAGATCAATTACATAGGGGAGTGTTGAGTCCCGAAGAACCAATCCACGAACAAAACGGATATCTGCCGAGGTTTGGAAATGGTTTGAGCAATTATAGAACGGGGAGTGGATCACGGGAAGAGAGCGTCGGGACACCTACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAATGACAGTGGTGTAGCTAATAATCCTATTTCTATTCCCCAGCAGCAAGAACAATGTGTTAGAAGAGAATCCCCTGAAGTAGCATTCCATCCGATCGATAAACTGAATATATCAGCACCTGCTCGTCCGATCCCGGATACGCTCGTAATGGTTGAGCCCACTGAGGAAGCATTTGGAGGAATGCTGATTGCAGATGCAGGTAGTTCCAAGGACTTGCGAAATCTTTGCGCTTCGGTGGCCGATGCTGTTCTCGACGAGCAAGTACCTGAGTTTTGTTGGTCCAACCCTCCTGATATAGCTCTGAGACAACCTATGGAGTCTGTTTGTCACACAGTCCCTTATATGTCAGCAGGGCAAGACGCAAGAAGGATGACTATCAAGGCGAGTTATAAGGAAGATATCATTCGGTTTCGAATTCCGTTGAGTTCGGGTATTGTGGAGTTAAGAGAAGAAGTGGCAAAGAGATTGAAAATGGAGGTGGGTACGTTCGATATCAAATACATGGACGATGATCGAGAATGGGTTCTTATGGCGTGCGATGCAGACCTGCAAGAGTGCGTAGAGATCTCGAAGTCATCAGGTAGCAATATAATAAGATTGTTGGTTCATGATATAAGTGTGAATCTTGGGAGTTCTTGTGAGAGTACTGGGGAGTGA 3105 45.93 MTEPDSNHPSTLFPKSTHRSVPDDRTQLMDFDLDLDFPWPLDQIPSFASNPMSPFLVSTSDHLDLDFPWPLDQIPSFASNPMSPFLVSTSDHLGSPLWAFSEPDDDDDSKFPASTCSVLGTSNSNSVPQKPSENHKFKILPVQSSSWGLIPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKLVLSTSGQPFVLDSQSNGLHQYRMASLTFMFSLEPDQDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALHYNVQGTLALPVFDPSGHSCLGVLELIMTSPKINYAPEVDKVCKALEAVNLKSSEILDHPNNQIHTSQCFSNQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLAYGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHMWGFRDACLEHHLRKGQGVSGRAFLSHSSCFCGDITQFSKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKTLLGALMATMKQHFYTLKVASGINLEDEEGLVEIIQVSRNGGFESRIEYIQIPRPMELPPHSDAMPNAGEVVALEKLQQQSLMVHDTPKDENNSARDDESHNPAPCPQSKEVKKTSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPEGSNQQNFVASQPSDPQYKETNTSEGQTIDTWARLEDQLHRGVLSPEEPIHEQNGYLPRFGNGLSNYRTGSGSREESVGTPTSHGSCQGSPANDSGVANNPISIPQQQEQCVRRESPEVAFHPIDKLNISAPARPIPDTLVMVEPTEEAFGGMLIADAGSSKDLRNLCASVADAVLDEQVPEFCWSNPPDIALRQPMESVCHTVPYMSAGQDARRMTIKASYKEDIIRFRIPLSSGIVELREEVAKRLKMEVGTFDIKYMDDDREWVLMACDADLQECVEISKSSGSNIIRLLVHDISVNLGSSCESTGE 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2792768 2796752 - Cp4.1LG14g02590.1 Cpe14g00447 480831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00447 1034 PANTHER PROTEIN NLP8 49 1032 IPR045012 GO:0003700
Cpe14g00447 1034 MobiDBLite consensus disorder prediction 593 630 - -
Cpe14g00447 1034 CDD PB1_NLP 940 1020 IPR034891 -
Cpe14g00447 1034 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 49 1032 - -
Cpe14g00447 1034 MobiDBLite consensus disorder prediction 715 750 - -
Cpe14g00447 1034 SMART PB1_new 939 1021 IPR000270 GO:0005515
Cpe14g00447 1034 MobiDBLite consensus disorder prediction 788 824 - -
Cpe14g00447 1034 MobiDBLite consensus disorder prediction 1 23 - -
Cpe14g00447 1034 Gene3D - 936 1022 - -
Cpe14g00447 1034 ProSiteProfiles RWP-RK domain profile. 619 700 IPR003035 -
Cpe14g00447 1034 SUPERFAMILY CAD & PB1 domains 932 1022 - -
Cpe14g00447 1034 Pfam RWP-RK domain 632 680 IPR003035 -
Cpe14g00447 1034 MobiDBLite consensus disorder prediction 787 824 - -
Cpe14g00447 1034 ProSiteProfiles PB1 domain profile. 939 1021 IPR000270 GO:0005515
Cpe14g00447 1034 MobiDBLite consensus disorder prediction 1 17 - -
Cpe14g00447 1034 Pfam PB1 domain 940 1020 IPR000270 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00447 - - - cmax:111483346 1989.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00035 Cpe-Chr2:189705 Cpe14g00447 Cpe-Chr14:2792768 1.33E-13 dispersed
Cpe03g01194 Cpe-Chr3:9777035 Cpe14g00447 Cpe-Chr14:2792768 1.36E-15 dispersed
Cpe06g00022 Cpe-Chr6:113524 Cpe14g00447 Cpe-Chr14:2792768 2.02E-13 dispersed
Cpe08g00047 Cpe-Chr8:308576 Cpe14g00447 Cpe-Chr14:2792768 6.95E-16 dispersed
Cpe01g00522 Cpe-Chr1:3003248 Cpe14g00447 Cpe-Chr14:2792768 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g190 . . Bda06g00162 . Bpe05g00708 Bpe07g00057 . . Cmo06g00603 Cmo16g00577 . . . . . Cpe14g00447 . . . . . . . . Cla07g01080 Cam07g1420 Cec07g1236 Cco07g1216 Clacu07g1141 Cmu07g1123 Cre07g1500 . . . . . . . Cme07g01523 . . . . . . . . . . . Cma06g00596 Cma16g00528 . . . . . . . . . . . . . . . . . . . . Chy07g01125 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g00522 . 169 964 NLP Transcription Factor Family AT1G64530 50.8 1.0e-208 723.8
Cpe14g00447 . 295 1034 NLP Transcription Factor Family AT4G24020 54.6 5.4e-202 701.4
Cpe01g00522 . 248 964 NLP Transcription Factor Family AT4G24020 53.4 6.9e-197 684.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50505 PF00564 PB1 5.10E-18 CL0072 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00447 Cpe_Chr14 FPKM 1.901744 1.970661 3.737393 3.372055 3.022158 3.486362 3.934641 1.026344 0.744386 0.685252