Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00456 ATGGACAATTTGATCTCTCTCGTTAACAAAATTCAGAGGGCTTGTACGGCTCTTGGTGACCATGGCGAAGCTAGCGCATTGCCTACACTCTGGGACTCTTTGCCGTCTATCGCCGTCGTCGGTGGTCAAATGGCGCCGCCTTCAAAAAAACCAGTGGATGGCGCAAAGTTCAACAAGAAACCAGTGGATGGCGTAAAGTTCAACAAGCATTCCAAGATGTCATTCAAGTCGAAGAAAAAAACGAGTGATGTAGCTAAAACCGAAGCCTTGTCGTTGCAGATTGAAGATGATGTTCCTGACTTTCCTAGAGGCGGAAGAGGTTCTTCAGGCCAACAAAATCGTGATAAAGAACGTCCTCAAGGAGATAAGGAGTTTCAGAATGATTATCCGAAGATGACAACAAAAAGAGGAAAGATGAGAAGAAAGCATTCCTCAAATGAGGATGATTTGGACTCTCTGTTGAACAGTGGTGTAGTGGGAAACCTTCCTAAATATGCCAATAAGATAACTTTGAAGAGGGGCAACCAGAAAGTATTGTTCAAGAAATCGAGACGATGGTTCGCTCCTTTATTGAAAAGTTTATTTGATGAATTGAGTACATCTTGTTCCTNCAAGTCTTCAGTGTTAGAGAGCATTGTCGGCAAGGATTTCTTACCCCGTGGATCTGGTATTGTTACTAGGCGTCCTCTTGTCTTGCAACTTCATAAAATTGACGAAGGAAGCAGAGAGTATGCGGAGTTTCTCCACCTTCCCAGGAAAAGATTTACCGATTTCGTCGCTGTCAGGAAGGAGATTCAAGATGAGACGGATCGAGAGACTGGTCGTTCTAAACAAATTTCCAGTGTCCCAATTCATCTTAGTATATATTCTCCCAATGTTGTAAACTTGACACTTATTGATCTTCCTGGGCTGACGAAAGTAGCTGTTGAGGGGCAACCAGAAAGTATTGTTCAAGAAATCGAGACGATGGTTCGCTCCTTTATTGAAAAGCCTAACTGTATTATACTTGCTATTTCACCTGCCAATCAAGATTTGGCTACTTCTGATGCAATTAAAATCTCTCGTGAAGTTGATCCTACAGTCGCTGTCAGGAAGGAGATTCAAGATGAGACGGATCGAGAGACTGGTCGTTCTAAACAAATTTCCAGTGTCCCAATTCATCTTAGTATATATTCTCCCAATGTTGTAAACTTGACACTTATTGATCTTCCTGGGCTGACGAAAGTAGCTGTTGAGGGGCAACCAGAAAGTATTGTTCAAGAAATCGAGACGATGGTTCGCTCCTTTATTGAAAAGCCTAACTGTATTATACTTGCTATTTCACCTGCCAATCAAGATTTGGCTACTTCTGATGCAATTAAAATCTCTCGTGAAGTTGATCCTACAGGGGAGAGGACTCTTGGTGTATTGACAAAGATTGATCTCATGGATAAGGGAACCGATGCTGTTGATATGCTGGAAGGCAAAGCTTATAGGTTGAAGTTTCCTTGGGTTGGTGTTGTGAATCGTTCACAAGCAGACATCAACAAAAATGTTGACATGATTGCTGCTAGGCGTAGAGAGCGGGAATATTTTGCTAATACTCCAGAATACAAGCACCTCGCTCGTAGGATGGGCTCTGAGCATCTAGCAAAGGTTCTTTCTAAGCATCTAGAAACGGTAATCAAGTCCAAAATCCCTGGCATTCAAAACCTCATTAACAAGACCATTTCTGAACTTGAATCCGAACTCAGCCGTCTCGGAAGGCCTGTTGCAAATGATGCTGGAGGAAAACTATACATGATTATGGAAATTTGCCGTGCTTTTGATCAGAATTTTAAAGAACACCTCGATGGCGTGCGTCCTGGTGGTGATAAAATTTACAATGTCTTTGATGACCAACTTCCTGCTGCTCTGAAGAGGTTGCAGTTTGACAGGCAACTGTCAATGGAAAATGTAAAGAAGCTTATTACTGAAGCTGATGGATATCAACCTCATTTAATAGCTCCTGAACAAGGATATCGCCGTCTGATCGAATCTACTTTAGTTACTATTAGAGGCCCAGCTGAGTCATGTGTTGATGCGGTTCATGCTATATTGAAGGATCTGGTCCACAAAGCTATGGGTGAAACTCTGGAATTAAAGCAGTATCCTGGTCTTAGAGTGGAGTTGGGAAACGCAGCTATTGAATCACTTGAAAGAATGAGAGAGCAAAGCAAGAAAGCATCACTTCTCCTTGTAGATATGGAGTCCAGCTACCTGACAGTTGATTTCTTCCGGAAGCTTCCTCAGGATATTGAAAAGGGAGGCAACCCTACACATTCAATTTTTGACCGATACAATGACTCGTATTTAAGGCGTGTTGGTACAACAGTGCTATCTTATGTCCATATGGTTTGTGCAACCTTACGAAACTCGATTCCGAAGTCCATTGTTTATTGTCAAGTACGAGAAGCCAAAAGAAGCCTCCTCGACCACTTTTTCACCGACCTGGGAAAACTAGAGCAAAAGCGCCTATCATCATTATTGAACGAGGATCCAGCGATCATGGAGCGTCGGACTGCGCTAGCAAAGAGGCTGGAGTTATACAGAAGCGCGCAAGCAGAAATTGACGCGGTTGCTTGGTCGAAGTAA 2613 42.79 MDNLISLVNKIQRACTALGDHGEASALPTLWDSLPSIAVVGGQMAPPSKKPVDGAKFNKKPVDGVKFNKHSKMSFKSKKKTSDVAKTEALSLQIEDDVPDFPRGGRGSSGQQNRDKERPQGDKEFQNDYPKMTTKRGKMRRKHSSNEDDLDSLLNSGVVGNLPKYANKITLKRGNQKVLFKKSRRWFAPLLKSLFDELSTSCSXKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKIDEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRSKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVQEIETMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPTVAVRKEIQDETDRETGRSKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVQEIETMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTLGVLTKIDLMDKGTDAVDMLEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRREREYFANTPEYKHLARRMGSEHLAKVLSKHLETVIKSKIPGIQNLINKTISELESELSRLGRPVANDAGGKLYMIMEICRAFDQNFKEHLDGVRPGGDKIYNVFDDQLPAALKRLQFDRQLSMENVKKLITEADGYQPHLIAPEQGYRRLIESTLVTIRGPAESCVDAVHAILKDLVHKAMGETLELKQYPGLRVELGNAAIESLERMREQSKKASLLLVDMESSYLTVDFFRKLPQDIEKGGNPTHSIFDRYNDSYLRRVGTTVLSYVHMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTDLGKLEQKRLSSLLNEDPAIMERRTALAKRLELYRSAQAEIDAVAWSK 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2864059 2875197 - Cp4.1LG14g02670.1 Cpe14g00456 480840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00456 870 PANTHER DYNAMIN-LIKE PROTEIN 1E 2 45 - -
Cpe14g00456 870 PANTHER DYNAMIN-LIKE PROTEIN 1E 200 360 - -
Cpe14g00456 870 PANTHER DYNAMIN-LIKE PROTEIN 1E 362 869 - -
Cpe14g00456 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 359 IPR027417 -
Cpe14g00456 870 Pfam Dynamin GTPase effector domain 774 866 IPR003130 GO:0003924|GO:0005525
Cpe14g00456 870 SMART dynamin_3 181 361 IPR001401 GO:0003924|GO:0005525
Cpe14g00456 870 SMART dynamin_3 362 511 IPR001401 GO:0003924|GO:0005525
Cpe14g00456 870 Pfam Dynamin family 205 360 IPR045063 -
Cpe14g00456 870 Pfam Dynamin family 362 473 IPR045063 -
Cpe14g00456 870 Gene3D - 1 361 IPR027417 -
Cpe14g00456 870 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 189 560 IPR030381 GO:0005525
Cpe14g00456 870 MobiDBLite consensus disorder prediction 93 149 - -
Cpe14g00456 870 Gene3D Dynamin, middle domain 591 846 - -
Cpe14g00456 870 MobiDBLite consensus disorder prediction 53 70 - -
Cpe14g00456 870 Gene3D - 362 569 IPR027417 -
Cpe14g00456 870 ProSiteProfiles GED domain profile. 778 870 IPR020850 -
Cpe14g00456 870 CDD DLP_1 203 560 IPR001401 GO:0003924|GO:0005525
Cpe14g00456 870 PRINTS Dynamin signature 442 460 IPR022812 -
Cpe14g00456 870 PRINTS Dynamin signature 484 503 IPR022812 -
Cpe14g00456 870 PRINTS Dynamin signature 301 319 IPR022812 -
Cpe14g00456 870 PRINTS Dynamin signature 392 409 IPR022812 -
Cpe14g00456 870 PRINTS Dynamin signature 461 477 IPR022812 -
Cpe14g00456 870 PANTHER DYNAMIN 2 45 IPR022812 -
Cpe14g00456 870 PANTHER DYNAMIN 200 360 IPR022812 -
Cpe14g00456 870 PANTHER DYNAMIN 362 869 IPR022812 -
Cpe14g00456 870 SMART GED_2 773 866 IPR003130 GO:0003924|GO:0005525
Cpe14g00456 870 MobiDBLite consensus disorder prediction 40 80 - -
Cpe14g00456 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 569 IPR027417 -
Cpe14g00456 870 Pfam Dynamin central region 481 748 IPR000375 -
Cpe14g00456 870 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 218 227 IPR019762 -
Cpe14g00456 870 MobiDBLite consensus disorder prediction 110 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00456 - - - csv:101209311 972.615
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00456 Cpe-Chr14:2864059 Cpe17g01033 Cpe-Chr17:7811022 2.99E-18 dispersed
Cpe01g01825 Cpe-Chr1:15536030 Cpe14g00456 Cpe-Chr14:2864059 1.58E-10 transposed
Cpe02g00700 Cpe-Chr2:4421614 Cpe14g00456 Cpe-Chr14:2864059 1.15E-10 transposed
Cpe08g00438 Cpe-Chr8:2801136 Cpe14g00456 Cpe-Chr14:2864059 1.05E-10 transposed
Cpe19g00091 Cpe-Chr19:707210 Cpe14g00456 Cpe-Chr14:2864059 5.86E-66 transposed
Cpe01g00612 Cpe-Chr1:3537873 Cpe14g00456 Cpe-Chr14:2864059 1.52E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g146 . . Bda06g00152 Bda08g00462 Bpe05g00697 Bpe07g00066 . . . . . . . . . Cpe14g00456 . . . . . . . . Cla07g01094 . Cec07g1258 Cco07g1235 . . Cre07g1519 . . Cone6ag0857 Cone9ag0859 . . . Cme07g01570 . . . . . . Bma05g00879 Bma12g00613 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00667 Chy07g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00456 Cpe_Chr14 FPKM 4.569149 5.138754 1.171141 1.386061 0.720476 1.339918 0.806169 68.97686 67.994003 71.665237