Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00461 ATGGCCCCCTCCAAATTCTCCGTCGCCATCCTCCTCCTCCTTTTACGCTTATTGATTCTTGACGGAGCCGAATCGCAGTTTCTTTGCAAAAGTTCCTCCTGCAGTGGCGTTTCCTTGCCGGCCGTTCGATTTCCGTTTCGACTGAAGAATTCGCAGGATTCTCGATGTGGATTCCAGCCGGATTTCGACCTGTTCTGCAACAATCGAAGCCAGACGATTCTCACTCTCCCGAACGCTGGAGACCTCGTGGTGGAGTTTATTGATTACAGATTTCAGAGGCTGTGGATAAACGATCCGGATCAATGTTTTCCAAGACGACTAGTTGTAAACTCTTTTGATCTGGAGAACTCGCCGTTTGTTTCTAACTATCGATTAGAACAGTATACTGTCCTTAATTGCTCCTATTACGTCGATACGTTGCCGTTCGATCGTGTTCGGAAGATCAAATGTATGAGCGGCAGAAACCACTCTGTAATCAATGTGCCGAACAGAGACCTTAAGGCGGTTTCCGCTTTCCTGCCATCACCGTGTAACGTTATCGCGACGAAGAGGCTTCCGTTGACAGGGATGGAGCTTGAAGAAGGAATGGTGGTGAATTGGAGCGAGCCAGATTGCGGATATTGCGAGATGCGCGGTGGAGATTGTGGATTCAAAAGCAATTCGAGTGCCGAAATCGAGTGTTTCAATCTTCCAAACGGCGGTATTCCACGGGGTGCCAAATACGGGTTGATCATCGGCGTGGCAATCCCAGGCGTCCTCTTCCTTATTGGGCTGATCTGTTTCATCTGCGGCAAGTTCAAGGCCTTTGCTCGCCTCAATAGTCCATCATCATATCTCTCTCCTTCAATGGGCCGCCAGCCCACTTCCGCCGTAGCAGGCCTCGATGGGCCGACAATTGAATCATTCCCCAAAACCATATTGGGCCAGAGCCGACGACTCCCAAAGCCCAGCGACACCACTTGTGCTATTTGCCTGTCGGAGTATCAGCCGAAAGAAGCGATCAGAACCATTCCAGATTGTGGTCACTTTTTCCATGCCAATTGCGTCGATGAGTGGCTTAAATTAAATGCCACGTGTCCAGTGTGCCGGAGCTCGCCGGAGGATTCCTCCGCAACCTCCACACCTACTCAGACTGTGTCGGTGTCAATGCCGACGTCCCCGGGGTCGGTAGGGTCATTGCAACGTCATGACTAG 1194 50.92 MAPSKFSVAILLLLLRLLILDGAESQFLCKSSSCSGVSLPAVRFPFRLKNSQDSRCGFQPDFDLFCNNRSQTILTLPNAGDLVVEFIDYRFQRLWINDPDQCFPRRLVVNSFDLENSPFVSNYRLEQYTVLNCSYYVDTLPFDRVRKIKCMSGRNHSVINVPNRDLKAVSAFLPSPCNVIATKRLPLTGMELEEGMVVNWSEPDCGYCEMRGGDCGFKSNSSAEIECFNLPNGGIPRGAKYGLIIGVAIPGVLFLIGLICFICGKFKAFARLNSPSSYLSPSMGRQPTSAVAGLDGPTIESFPKTILGQSRRLPKPSDTTCAICLSEYQPKEAIRTIPDCGHFFHANCVDEWLKLNATCPVCRSSPEDSSATSTPTQTVSVSMPTSPGSVGSLQRHD 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2904452 2906674 + Cp4.1LG14g02530.1 Cpe14g00461 480845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00461 397 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 9 383 - -
Cpe14g00461 397 Pfam Wall-associated receptor kinase C-terminal 189 228 IPR032872 -
Cpe14g00461 397 Pfam Wall-associated receptor kinase galacturonan-binding 29 98 IPR025287 GO:0030247
Cpe14g00461 397 SMART ring_2 321 362 IPR001841 -
Cpe14g00461 397 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 383 - -
Cpe14g00461 397 MobiDBLite consensus disorder prediction 364 397 - -
Cpe14g00461 397 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
Cpe14g00461 397 Pfam Ring finger domain 320 363 IPR001841 -
Cpe14g00461 397 SUPERFAMILY RING/U-box 314 366 - -
Cpe14g00461 397 CDD RING-H2_PA-TM-RING 320 363 - -
Cpe14g00461 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 368 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00461 - - - bhj:120071243 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00590 Cpe-Chr8:3893453 Cpe14g00461 Cpe-Chr14:2904452 2.75E-64 dispersed
Cpe11g00408 Cpe-Chr11:2259859 Cpe14g00461 Cpe-Chr14:2904452 1.24E-36 dispersed
Cpe14g00461 Cpe-Chr14:2904452 Cpe12g00013 Cpe-Chr12:53841 5.48E-19 dispersed
Cpe01g00619 Cpe-Chr1:3570770 Cpe14g00461 Cpe-Chr14:2904452 0 wgd
Cpe14g00049 Cpe-Chr14:275564 Cpe14g00461 Cpe-Chr14:2904452 2.76E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g133 Blo02g01150 . Bda06g00147 . Bpe05g00694 Bpe07g00071 . . Cmo06g01042 Cmo16g00596 . . . . . Cpe14g00461 . . . . . . . . . . . . . . . Cone8ag0244 . . . . . . . . . . . . . . Bma12g00608 . . . . Cma16g00544 Car06g00858 . . . . . . . . . . . . . . . . . . Csa04g00658 Chy07g01153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00461 Cpe_Chr14 FPKM 2.139724 2.768497 0.0 0.0 3.332459 3.208962 4.060152 0.0 0.0 0.0