Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00470 ATGGCTTCCACTGCTGAAATTCCGAAAACAAAGAAACCCAGGAACAGCCGGAAGGCTCTGAAGGACAAAAACTCTACACCGGAGGAGCCACAATCTGAATCCTCCATGGTTACGAAAGTGACACAGCCATCGGAAGAGGAGATCGTCCTCTCTCGGAATCAATCTTCGGCTAAGAAACCGAAATCCAAAGCTGCGCCGAAGAAGCAGCCGGCGAAGCAGTCCTTCGACAAAGAGTTGCAGGAAATGCAGGACATGCTTCAACAATTGAGGCTCGATAAGGAGAAGACTGAGGAGCTTTTGAAAGCCAAAGATGAGATGCTTAAGCAGAAGGATGAAGAACTTAAGACGAGAGATATGGAGCAGGAAAAGCTCCAGATCGAATTTAAGAAGTTGCAGAAGTTGAAGGAGTTCAAACCTACTATGAACTTCCCTATGATTCAAATTCTGAAAGACAAGGAACAAGAGAAGAAAGAGAAGAAGAAGTGCGCGGAAAAGAAGAGGCCATCTCCACCTTACATCTTATGGTGCAAAGATCAATGGAACGAGATCAAGAAGGAGAATCCAGAGGCAGAGTTCAAGGAGATCTCGAACATTTTGGGGGCGAAGTGGAAGAATGTCACAGCAGATGAGAAGAAGCCATATGAGGAGAGGTATCAGGCTGAAAAACAAGCCTATTTGCAAATCACTTCTAAAGAGAAGCGTGAAAGTGAGGCGATGAAGCTGTTAGAAGAGGAGCAGAAGCAGAAGACAGCCATGGAGCTGCTTGATCAATACCTTCAATTCAAAGGGGAAGCCGAGAAAGAGAACAAGAAGAAGAAGAAAGAGAAGGATCCATTGAAGCCCAAGCATCCTATGTCTGCATTCTTTCTCTTTTCAAATGAGAGGCGTGCATCCCTTCTTGCCGAAAACAAGAATGTTCTAGAGGTAGCGAAGATAACAGGTGAGGAGTGGAAGAACATGACAGAGAAACAGAGAGGTCCTTACGAAGAGATGGCGAGGAAGAACAAGGAAAAGTACATGCAGGAAATGGAAATGTACAAGCAGCAAAAGGAGGAGGAAGCAGCAATCCTCAAGAAGGAAGAGGAAGAACTAATGAAGCTTCATAAACATGAAGCTCTGCTGTTGCTGAAGAAGAAAGAGAAAACCGAGACTATAATAAAGAAAACAAAAGAGGAGCGGCAGAAGAAGAAGAAGGAAGGGAAGAAGAGTGTTGATCCTAACAAGCCCAAGAAGCCTGCATCCTCTTACATCCTGTTCAGCAAAGAAGCAAGGAAAAGTGTAATGGAGGAGAGGCCAGGAGCCAACAATTCCACAGTGAATGCACTGATTTCAGTGAAATGGAAGGAACTAAGTGAAGGGGAGAGGAAGATGTGGAATGATAAAGCTGCAGAAGCCATGGATGCTTACAGAAAGGAATTGGAGGAATACAACAAAACTGTTGGTGAAATTAAGGCCTGA 1458 44.51 MASTAEIPKTKKPRNSRKALKDKNSTPEEPQSESSMVTKVTQPSEEEIVLSRNQSSAKKPKSKAAPKKQPAKQSFDKELQEMQDMLQQLRLDKEKTEELLKAKDEMLKQKDEELKTRDMEQEKLQIEFKKLQKLKEFKPTMNFPMIQILKDKEQEKKEKKKCAEKKRPSPPYILWCKDQWNEIKKENPEAEFKEISNILGAKWKNVTADEKKPYEERYQAEKQAYLQITSKEKRESEAMKLLEEEQKQKTAMELLDQYLQFKGEAEKENKKKKKEKDPLKPKHPMSAFFLFSNERRASLLAENKNVLEVAKITGEEWKNMTEKQRGPYEEMARKNKEKYMQEMEMYKQQKEEEAAILKKEEEELMKLHKHEALLLLKKKEKTETIIKKTKEERQKKKKEGKKSVDPNKPKKPASSYILFSKEARKSVMEERPGANNSTVNALISVKWKELSEGERKMWNDKAAEAMDAYRKELEEYNKTVGEIKA 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2959119 2962362 - Cp4.1LG14g02460.1 Cpe14g00470 480854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00470 485 Coils Coil 146 166 - -
Cpe14g00470 485 CDD HMGB-UBF_HMG-box 409 474 - -
Cpe14g00470 485 CDD HMGB-UBF_HMG-box 284 344 - -
Cpe14g00470 485 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 165 233 IPR009071 -
Cpe14g00470 485 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 409 477 IPR009071 -
Cpe14g00470 485 MobiDBLite consensus disorder prediction 263 282 - -
Cpe14g00470 485 SUPERFAMILY HMG-box 401 482 IPR036910 -
Cpe14g00470 485 MobiDBLite consensus disorder prediction 263 284 - -
Cpe14g00470 485 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 281 347 IPR009071 -
Cpe14g00470 485 Gene3D High mobility group box domain 167 226 IPR036910 -
Cpe14g00470 485 MobiDBLite consensus disorder prediction 384 417 - -
Cpe14g00470 485 Coils Coil 72 113 - -
Cpe14g00470 485 MobiDBLite consensus disorder prediction 384 408 - -
Cpe14g00470 485 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 9 482 - -
Cpe14g00470 485 Coils Coil 379 399 - -
Cpe14g00470 485 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 9 482 IPR044601 GO:0003677
Cpe14g00470 485 MobiDBLite consensus disorder prediction 1 89 - -
Cpe14g00470 485 CDD HMGB-UBF_HMG-box 167 225 - -
Cpe14g00470 485 SUPERFAMILY HMG-box 154 227 IPR036910 -
Cpe14g00470 485 Pfam HMG (high mobility group) box 409 477 IPR009071 -
Cpe14g00470 485 Pfam HMG (high mobility group) box 166 227 IPR009071 -
Cpe14g00470 485 Pfam HMG (high mobility group) box 281 347 IPR009071 -
Cpe14g00470 485 Gene3D High mobility group box domain 264 372 IPR036910 -
Cpe14g00470 485 Gene3D High mobility group box domain 375 483 IPR036910 -
Cpe14g00470 485 Coils Coil 459 485 - -
Cpe14g00470 485 MobiDBLite consensus disorder prediction 29 60 - -
Cpe14g00470 485 SMART hmgende2 280 348 IPR009071 -
Cpe14g00470 485 SMART hmgende2 164 234 IPR009071 -
Cpe14g00470 485 SMART hmgende2 408 478 IPR009071 -
Cpe14g00470 485 SUPERFAMILY HMG-box 268 355 IPR036910 -
Cpe14g00470 485 Coils Coil 329 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00470 K09273 UBTF; upstream-binding transcription factor - csv:101204736 618.616
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00470 Cpe-Chr14:2959119 Cpe19g00286 Cpe-Chr19:2478017 2.54E-07 dispersed
Cpe01g00629 Cpe-Chr1:3634172 Cpe14g00470 Cpe-Chr14:2959119 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g113 . . . Bda08g00480 . . . . . . . . . . . Cpe14g00470 . . . . . . . . . . . . . . . . . Cone6ag0841 Cone9ag0838 . . . Cme07g01578 . . . . . . Bma05g00859 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00644 Chy07g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013737 1 1 1 1 1 0 2 0 0 1 0 0 0 1 1 0 0 2 2 0 1 1 1 1 1 1 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50509 PF00505 HMG_box 7.20E-16 CL0114 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00470 Cpe_Chr14 FPKM 12.636723 12.298477 16.622583 17.344738 23.478683 25.42374 22.557413 24.128637 22.622908 25.970181