Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00477 ATGGATCATTCTGGGGCGGCCAGTAACCAGAAACCAGCAGTTGAAGTTGCCAAAGACAAGAATGGTGTGGACCAAGTGCTGCTTAGGAACTCTCGTGGAGCTTCAGCAAGGGTTAGCTTGCATGGAGGCCAAGTTCTTTCATGGAAAACTGAAAAAGGTGAAGAATTATTGTTTACCAGTACTAAGGCAGTTTTCAAGCCACCAAAAGCTGTGAGAGGAGGAATTCCAATCTGTTTTCCGCAGCACGGGTTTGCTCGAAACAAGATTTGGAAAATCGACGATAACCCTCCTCCTCTTACTCGTGGCGAAATCAAAGACAAATCCTGCATCGATTTGCTTCTTAAACCGTCTGAAGACGATCTGAAAATATGGCCACATAGTTTTGAATTCAGACTCAAGATCTGTTTGACAGCAGATGGCAATCTCACTTTAATATCACGAATTCGTAATATCAATTGCAAGCCTTTCAGTTTCTCCATTGCATTCCACACATATTTCTCCATTTCTGATATCAGTGAGGTAAGGGTCGAGGGGCTTGAGATTCTCGACTATCTCGACAACTTATGCGATAAACAACGGTTCACCGAGCAAGGAGACGCCTTAACGTTTGAATCCGAGATCGATCGGGTTTATCTTAGTTCTTCAGATCTCGTCGCCGTGCTTGATCATGAACGAAAACGCACATTTGTTATAAGAAAGGAAGGACTTCCAGATGTTGTGGTGTGGAATCCATGGGAGAAGAAATCGAAATCCATCGTCGATCTCGGGGACGAAGACTACAAACAAATGCTATGTGTTGATGGAGCTGCAATTGAGAAACCTATTACATTGAAGCCAGGTGAGGAATGGACTGGCCGTTTGGAACTATCCATCCTCCCCTCGAGTTAA 888 44.14 MDHSGAASNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSTKAVFKPPKAVRGGIPICFPQHGFARNKIWKIDDNPPPLTRGEIKDKSCIDLLLKPSEDDLKIWPHSFEFRLKICLTADGNLTLISRIRNINCKPFSFSIAFHTYFSISDISEVRVEGLEILDYLDNLCDKQRFTEQGDALTFESEIDRVYLSSSDLVAVLDHERKRTFVIRKEGLPDVVVWNPWEKKSKSIVDLGDEDYKQMLCVDGAAIEKPITLKPGEEWTGRLELSILPSS 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 2998798 3003942 - Cp4.1LG14g02350.1 Cpe14g00477 480861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00477 295 CDD D-hex-6-P-epi_like 26 290 IPR025532 -
Cpe14g00477 295 Gene3D - 19 292 IPR014718 GO:0030246
Cpe14g00477 295 PANTHER GLUCOSE-6-PHOSPHATE 1-EPIMERASE 5 295 - -
Cpe14g00477 295 Pfam Aldose 1-epimerase 24 289 IPR008183 GO:0005975|GO:0016853
Cpe14g00477 295 PANTHER APOSPORY-ASSOCIATED PROTEIN C-RELATED 5 295 - -
Cpe14g00477 295 SUPERFAMILY Galactose mutarotase-like 19 289 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cpe14g00477 295 PIRSF PHexose_mutarotase 2 294 IPR025532 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00477 K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] - csv:101205699 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00699 Cpe-Chr1:4049367 Cpe14g00477 Cpe-Chr14:2998798 3.79E-31 dispersed
Cpe08g00572 Cpe-Chr8:3740431 Cpe14g00477 Cpe-Chr14:2998798 5.94E-154 dispersed
Cpe11g00629 Cpe-Chr11:4013201 Cpe14g00477 Cpe-Chr14:2998798 4.80E-122 dispersed
Cpe14g00477 Cpe-Chr14:2998798 Cpe03g01770 Cpe-Chr3:13347462 6.38E-157 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g97 Blo02g01136 . . Bda08g00488 Bpe05g00676 . . . . Cmo16g00612 . . . . . Cpe14g00477 . . . . . . . . Cla07g01406 Cam07g1507 Cec07g1604 Cco07g1561 Clacu07g1497 Cmu07g1467 Cre07g1843 . . . . . . . Cme07g01587 . . . . . . Bma05g00849 . . . . Cma06g01035 Cma16g00563 . . . . . . . . . . . . . . . . . . . Csa04g00635 Chy07g01178 .
Vvi4g989 . Blo16g00050 . . . Bpe13g00440 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0817 . . . . . Chy07g01232 . . . Bda11g01861 . . . . Bma06g00118 . . . . . . . . Cpe14g00477 . . . . . . . . . . . . . . . Csa04g00577 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000273 4 7 4 5 2 4 5 4 4 4 4 4 6 4 5 6 4 8 6 4 4 4 4 4 4 4 4 15 8 4 149
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00477 Cpe_Chr14 FPKM 0.752896 0.618056 0.0 0.0 0.0 0.0 0.0 0.0 0.067379 0.0