Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00486 AAGGGTTTGTTGCTGTCGGCGTTGAGTGTCGGCGTCGGAGTTGGAGTGGGGCTCGGATTAGCCACCGGACAGAGCGTCGTCACCAAATGGTCCGCCTCTAATTCTTCCTCCAACCTCATCACCGCCGACAAGCTCGAACAGGAAATGCTTAAACAGATTGTTGATGGCCGTCAAAGCAAATTTCGAAGTTCACTCGAAACCTCTCGCCTGCAAGCCGAGCCATCTTACTCTCTGGCCCAGCTGGTCTCATTTCTCCCTAATCTTTTTACTTCAATCTTCCAAAAATCATGTTCAAAGGTTGTAATCTTTGTGTTCTTATGTTCCCTTCATGAAGAGCTTTACCAGCAAATGCTTGCCAAGGCATTGGCTCACTACTTCGAGGCCAAATTGTTGCTTTTAGATATCACTGACTTCTCCTTGAAGATTCAGAGCAAATATGGGACTTCTGTCAAGGAATCTGCTTTTAGAAGGTCTACCTCAGAGTCTACATTGGAGAAATTGTCTAGCTTATTTGGATCGTTTTCGATCCTTCCACCCCGAGAAGAACAAAGAACAGAGACCAAACAGAGGACATATCCCACCACCACCGCAGCGACTCCCCTCCGCCGCCGTGACTCAGATCCGGTTCTGCCGGCTCCGCCTAAAAATACCCATCTTTGTAAGGGTTTGTTGCTGTCGGCGTTGAGTGTCGGCGTCGGAGTTGGAGTGGGGCTCGGATTAGCCACCGGACAGAGCGTCGTCACCAAATGGTCCGCCTCTAATTCTTCCTCCAACCTCATCACCGCCGACAAGCTCGAACAGGAAATGCTTAAACAGATTGTTGATGGCCTATTAACAAGTGCGGCGTACGTGCATTTGAAACACGCTGAAGTTTCGAAGTTCACTCGAAACCTCTCGCCTGCAAGCCGAGCCATCTTACTCTCTGGCCCAGCTGAGCTTTACCAGCAAATGCTTGCCAAGGCATTGGCTCACTACTTCGAGGCCAAATTGTTGCTTTTAGATATCACTGACTTCTCCTTGAAGATTCAGAGCAAATATGGGACTTCTGTCAAGGAATCTGCTTTTAGAAGGTCTACCTCAGAGTCTACATTGGAGAAATTGTCTAGCTTATTTGGATCGTTTTCGATCCTTCCACCCCGAGAAGAACAAAGAACAGGTTCGTTGCGGAGGCAACGTAGTGGTGTGGAACTAGCGTCGTGGGGAAAGGAAGGATCTTCTAATCTTCCGAAACTTCGAAGAAATTCGTCTGCTGCTGCTAATATTATTAACCTCGCGAACCAGTGCAATGTCGAGAAGTCAGCTTCCCTTAAGCACACGAGCAGCTGGGCGTTCGAGGAGAAACTGCTTATACAGTCACTATATAAGGTTCTTGTATACGTGTCGAAAGCGAGTCCGATTGTTTTATATCTTCGTGACGTAGATAGTTTCTTATCGACCTCAAATAGGATCTACAACTTGTTCCAAAAAATGCTACAAAAACTGTCTGGATCAATTTTGATACTCGGTTCGCGTACTATCGATCCGAGCAATGATTATATGGAGGTGGACGAGCGGCTGTCCGCTCTTTTTCCTTATAATATCGAGATCAGGCCACCCGAAGATGAATCTCAGCATGTCAGCTGGAAGTCTCAATTGGAAGAAGATATGAAAAAGATCAAGGTTCAGGACAACCGAAACCATATCATCGAAGTTCTTTCAGCAAATGATCTCGACTGTGATGATCTCGACTCGATCTGCGTTGCTGATACGATGGTTCTCAGTAACTACGTAGAAGAGATTGTAGTGTCTGCAGTTTCTTATCATCTAATGAACAACAAGGATCCCGAATACCGAAACGGAAAACTGATCATTTCGAGCAAGAGTTTGTCCCATGGATTGAGCATATTCCAAGCAGGAAAATCCACTGGCAAGAATTCAGTACAGCTTGAAGCACAAACTGAAGCTTCAAAGGACTCGGGAGCGGCGAAATCCGAAGCAAAAGCTGATACCACAGCTGAAGCAGCGCCTGCTGCAGTGACGAAAACCGAGGGAGAGACCGCGGTTCCAGCTGCAAAAGCCCCGGAAGTTCAACCAGACAACGAGTTCGAGAAACGCATTAGGCCGGAGGTCATACCAGCGAACGAGATTAATATTACATTTTCCGATATCGGGGCGATGGAGGAGATAAAAGATTCTCTTCAAGAACTTGTAATGCTTCCTTTACGAAGGCCGGATTTATTTCTCGGAGGTCTTTTGAAGCCATGTAGAGGCATATTATTGTTCGGACCGCCCGGAACTGGAAAGACTATGTTAGCCAAGGCCATAGCGAAAGAAGCCGGAGCAAGCTTCATTAATGTATCGATGTCGACCATAACTTCGAAATGGTTCGGAGAAGACGAGAAGAATGTTCGAGCTTTATTCACATTAGCAGCCAAAGTCTCTCCCACGATCATATTTGTGGACGAGGTAGATAGTATGCTCGGACAGCGCACGAGAGTTGGCGAGCATGAGGCAATGAGGAAAATAAAGAACGAGTTCATGGCTCATTGGGATGGACTGTTGACAAAGCCAGGGGAGCGCGTGCTCGTTCTTGCAGCAACCAATAGGCCGTTTGACCTCGACGAAGCCATCATACGTCGATTCGAGCGAAGAATAATGGTGGGGTTACCAACAGCAGAGAATAGAGAAATGATATTAACAACTCTGTTGGGGAAAGAAAAGGTTGAAGAAGGGCTAGACATGAAGCTCCTTGCTGCATTCACAGAAGGATATAGTGGAAGTGATCTCAAGAACTTCTGTATGACGGCTGCATATCGACCCGTTCGGGAGCTAATAAAGCAAGAAAGACTCAAGGATATGGAGAAAAAACGAAGGGCTGCTGAAGGGCAGAATAAGGCAGTAGGGGATGGAGATGGCGAAAGCAAGGAAGAAAGAGTTGCAGCGAGTTTTGCAGCGGAAGGGTCGATGATGAGTGAATTGAAGCAATGGAATGAGTTATATGGGGAAGGAGGGTGTAGGAAGAAGCAACAGTTGAGTTATTTCCTGTGA 3027 46.75 KGLLLSALSVGVGVGVGLGLATGQSVVTKWSASNSSSNLITADKLEQEMLKQIVDGRQSKFRSSLETSRLQAEPSYSLAQLVSFLPNLFTSIFQKSCSKVVIFVFLCSLHEELYQQMLAKALAHYFEAKLLLLDITDFSLKIQSKYGTSVKESAFRRSTSESTLEKLSSLFGSFSILPPREEQRTETKQRTYPTTTAATPLRRRDSDPVLPAPPKNTHLCKGLLLSALSVGVGVGVGLGLATGQSVVTKWSASNSSSNLITADKLEQEMLKQIVDGLLTSAAYVHLKHAEVSKFTRNLSPASRAILLSGPAELYQQMLAKALAHYFEAKLLLLDITDFSLKIQSKYGTSVKESAFRRSTSESTLEKLSSLFGSFSILPPREEQRTGSLRRQRSGVELASWGKEGSSNLPKLRRNSSAAANIINLANQCNVEKSASLKHTSSWAFEEKLLIQSLYKVLVYVSKASPIVLYLRDVDSFLSTSNRIYNLFQKMLQKLSGSILILGSRTIDPSNDYMEVDERLSALFPYNIEIRPPEDESQHVSWKSQLEEDMKKIKVQDNRNHIIEVLSANDLDCDDLDSICVADTMVLSNYVEEIVVSAVSYHLMNNKDPEYRNGKLIISSKSLSHGLSIFQAGKSTGKNSVQLEAQTEASKDSGAAKSEAKADTTAEAAPAAVTKTEGETAVPAAKAPEVQPDNEFEKRIRPEVIPANEINITFSDIGAMEEIKDSLQELVMLPLRRPDLFLGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMAHWDGLLTKPGERVLVLAATNRPFDLDEAIIRRFERRIMVGLPTAENREMILTTLLGKEKVEEGLDMKLLAAFTEGYSGSDLKNFCMTAAYRPVRELIKQERLKDMEKKRRAAEGQNKAVGDGDGESKEERVAASFAAEGSMMSELKQWNELYGEGGCRKKQQLSYFL 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3079211 3088297 + Cp4.1LG14g02320.1 Cpe14g00486 480870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00486 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 948 IPR027417 -
Cpe14g00486 1008 ProSitePatterns AAA-protein family signature. 854 873 IPR003960 GO:0005524|GO:0016887
Cpe14g00486 1008 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 192 - -
Cpe14g00486 1008 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 221 1008 - -
Cpe14g00486 1008 Pfam AAA+ lid domain 905 948 IPR041569 -
Cpe14g00486 1008 CDD AAA 717 882 - -
Cpe14g00486 1008 Gene3D - 261 555 IPR027417 -
Cpe14g00486 1008 MobiDBLite consensus disorder prediction 181 211 - -
Cpe14g00486 1008 Gene3D - 710 975 IPR027417 -
Cpe14g00486 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 551 IPR027417 -
Cpe14g00486 1008 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 192 - -
Cpe14g00486 1008 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 221 1008 - -
Cpe14g00486 1008 SMART AAA_5 747 884 IPR003593 -
Cpe14g00486 1008 Pfam ATPase family associated with various cellular activities (AAA) 751 881 IPR003959 GO:0005524|GO:0016887
Cpe14g00486 1008 Gene3D - 883 970 - -
Cpe14g00486 1008 MobiDBLite consensus disorder prediction 645 690 - -
Cpe14g00486 1008 MobiDBLite consensus disorder prediction 947 972 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00486 - - - csv:101213686 1300.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00632 Cpe14g00486 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00632 Cpe-Chr5:3863595 Cpe14g00486 Cpe-Chr14:3079211 4.22E-31 dispersed
Cpe13g00283 Cpe-Chr13:2228672 Cpe14g00486 Cpe-Chr14:3079211 3.41E-31 dispersed
Cpe14g00486 Cpe-Chr14:3079211 Cpe20g00310 Cpe-Chr20:1743519 1.01E-12 dispersed
Cpe01g00643 Cpe-Chr1:3712809 Cpe14g00486 Cpe-Chr14:3079211 2.23E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00486 Cpe_Chr14 FPKM 9.950393 10.206127 8.897685 9.445678 10.416334 10.737928 10.122336 12.813807 13.931203 14.223196