Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00493 ATGTGCATATCAACTTTCTTCCACTACTCCAAAATGGTGCACCTCTCAACCAACACTGCTAGCAAACTCTTGTCCAAGTTGGCCCAAGGGAACGGCCATGGCGAGGATTCGCCATATTTTGATGGCTGGAAGGCTTATGACACTGACCCATTTCATCCAACAATCAATCCTCGTGGGGTTATTCAAATGGGTTTGGCTGAAAATCAGCTTTCTTTTGAATTCGTGGAGAAATGGATCAAAAACAATCCAAAAGCTTCCATTTGTAGCGTTGAAGGAGTTCATGAGTTTAAAGACATAGCCAACTTCCAGGATTACCATGGATTGCCACGTGGTGGAGCTACTGGAGCTCATGAAACGGTGGCGTTTTGTTTGGCTAATCCTGGGGAAGCATTTCTTGTTCCTGTTCCTTATTATCCAGGATTTGATAGAGATCTGACGTGGCGAACCGGAGTCAAAATTGTTCCAGTAATTTGTGAAAGCTCAAACAACTTCAAACTGACAAGAGAAGCCATGGAAACAGCTTACGTGGAAGCTGAAAAATCTGGCATAAAAGTCAAAGGCTTACTCATAACCAATCCTTCAAATCCACTTGGCACAGTATACGACAAAAAAACGCTCGAAACTGCTGTTACATTCATCAATGAAAAGAACATACATTTAGTGTGCGATGAAATCTATGCTGCCACTGTCTTTGCAGAGCCTGGCTTCATTAGTATCTCCGAAGTGATTGAAAACGACACTGAATGCGATAAGAATCTTATCCATGTCGTTTATAGCCTCTCCAAGGATATGGGATTCCCCGGATTTCGTGTTGGCATTATCTACTCTTACAATGATGCTGTCGTGGCTTGCGCTCGTAAGATGTCGAGCTTCGGCCTTGTCTCGTCGCAAACACAATATTTGATTGCGTCGATGTTGTCTGATGATGCGTTTGTCGATCGCTTCCTTGCTGGCAGTGCCGAAAAGCTCGCTACACGTCACTGTAACTTTACCAAAGGACTTGCTCAGGTTGGAATTGGATATTTGAAAGGAAGTGGTGGGTTGTTCTTGTGGATGGATTTACGACATCTTTTGAAAGAGAAGACATTAGAAGCAGAAATGACACTATGGAGGGTGATAATCAATGACGTTAAACTCAACGTGTCGCCCGGTTCGTCATTCCATTGCTCGGAACCGGGATGGTTCAGGGTTTGCTTTGCAAACATGGACGACAACACAATGGACATCTCCATAACAAGAATTAGAAACTTTGCGCTACAAAACAAGGAGGTAGCCAAGGTTAAGAAACAAAAATTCTGTTGGCGCCAAAGCAGCCTCGAGCTTCGATTGTCGTCTCGAAGGCTCGAAGACATCATGTCGCCACACTCGCCATTGCCTCAGTCTCCAATGCTCCGAGCAACGACTTAA 1407 44.28 MCISTFFHYSKMVHLSTNTASKLLSKLAQGNGHGEDSPYFDGWKAYDTDPFHPTINPRGVIQMGLAENQLSFEFVEKWIKNNPKASICSVEGVHEFKDIANFQDYHGLPRGGATGAHETVAFCLANPGEAFLVPVPYYPGFDRDLTWRTGVKIVPVICESSNNFKLTREAMETAYVEAEKSGIKVKGLLITNPSNPLGTVYDKKTLETAVTFINEKNIHLVCDEIYAATVFAEPGFISISEVIENDTECDKNLIHVVYSLSKDMGFPGFRVGIIYSYNDAVVACARKMSSFGLVSSQTQYLIASMLSDDAFVDRFLAGSAEKLATRHCNFTKGLAQVGIGYLKGSGGLFLWMDLRHLLKEKTLEAEMTLWRVIINDVKLNVSPGSSFHCSEPGWFRVCFANMDDNTMDISITRIRNFALQNKEVAKVKKQKFCWRQSSLELRLSSRRLEDIMSPHSPLPQSPMLRATT 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3131590 3133673 + Cp4.1LG14g02300.1 Cpe14g00493 480877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00493 468 CDD AAT_like 112 415 - -
Cpe14g00493 468 Gene3D - 111 308 IPR015421 GO:0003824
Cpe14g00493 468 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 111 428 - -
Cpe14g00493 468 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 16 109 - -
Cpe14g00493 468 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 16 109 - -
Cpe14g00493 468 SUPERFAMILY PLP-dependent transferases 33 417 IPR015424 -
Cpe14g00493 468 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 259 272 IPR004838 GO:0003824|GO:0009058|GO:0030170
Cpe14g00493 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 63 89 - -
Cpe14g00493 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 253 277 - -
Cpe14g00493 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 96 112 - -
Cpe14g00493 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 182 206 - -
Cpe14g00493 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 218 241 - -
Cpe14g00493 468 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 285 308 - -
Cpe14g00493 468 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 111 428 - -
Cpe14g00493 468 Gene3D Aspartate Aminotransferase, domain 1 309 413 IPR015422 GO:0003824
Cpe14g00493 468 Gene3D Aspartate Aminotransferase, domain 1 23 91 IPR015422 GO:0003824
Cpe14g00493 468 Pfam Aminotransferase class I and II 111 414 IPR004839 GO:0009058|GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00493 K20772 ACS1_2_6; 1-aminocyclopropane-1-carboxylate synthase 1/2/6 [EC:4.4.1.14] - csv:101212728 817.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00391 Cpe-Chr12:2792309 Cpe14g00493 Cpe-Chr14:3131590 0 dispersed
Cpe12g00392 Cpe-Chr12:2801448 Cpe14g00493 Cpe-Chr14:3131590 0 dispersed
Cpe14g00493 Cpe-Chr14:3131590 Cpe19g00697 Cpe-Chr19:5472380 6.43E-163 dispersed
Cpe18g00374 Cpe-Chr18:5074502 Cpe14g00493 Cpe-Chr14:3131590 1.86E-114 dispersed
Cpe01g00653 Cpe-Chr1:3779886 Cpe14g00493 Cpe-Chr14:3131590 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g40 Blo02g01120 Blo03g00222 Bda06g00119 . . Bpe07g00098 . . . Cmo16g00632 . . . . . Cpe14g00493 . . . . . . . . Cla07g00752 Cam07g0805 Cec07g0867 Cco07g0843 Clacu07g0787 Cmu07g0794 Cre07g1146 . . . Cone9ag0808 . . . Cme07g01616 . . . . . . . Bma12g00069 . . . . Cma16g00582 . . . . . . . . . . . . . . . . . . . Csa04g00609 Chy07g01202 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001626 1 2 3 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 5 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00493 Cpe_Chr14 FPKM 0.0 0.0 0.250858 0.09638 0.023032 0.081964 0.0 0.071494 0.0 0.0