Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00501 ATGGAATATTTCGCTTCCGTTCAGATTTTCTGTATGATCTTTGCAGTTCTGACTGTGACCGGTGATTCCTTGGCATCGGATGAAGCATCGGCTCTTAAAATTTTCAAACAACAAATATCTAAAGATCCAAAGCGAGTTTTATCAAATTGGAATTTACAAGTTGAAAATCCCTGTAACTGGTCTGGCATTGCCTGTTCTTCAGATGGTGGCCATGTTATAAAGCTTGATGTTTCTGGGGCATTGCTGCAAGGGTTTCTAGCACCAAGCTTGGGTCAACTCAGCTTCCTGCAAGAATTGTATCTTCATGGCAACAATCTGCTTGGAACAATACCTNATGTTTCTGGGGCATTGCTGCAAGGGTTTCTAGCACCAAGCTTGGGTCAACTCAGCTTCCTGCAAGAATTGTATCTTCATGGCAACAATCTGCTTGGAACAATACCTAAGGAGCTGGGGTTATTAAAGAAACTTAAGGTTCTTGATTTGGGGAGGAATCAACTCTCAGGCTCCATCCCTTCAGAGATTGGGAGTTTGTCAGATATTCTGAAAATCAACTTTGGATCGAATGGATTGACCGGGAGGCTACCCCCGGAGCTCGGAAATTTGAGATACCTCAGAGAACTTAGGTTAGATAGGAATAAACTTCAAGGATCTATTCCAGATGGTGATATCTTAGAACTTACATCCAATATGCATAGAATGTATGCATCAAATGCAACTGGACTCTGTCACTCAACTGAGCTCAAGTTTGCAGATTTTTCATACAATTTCTTTGTTGGGAAAGTACCCAAGTGCTTGGACTATCTTCCAAGGTCAAGTTTTCGAGGGAACTGTTTTCATTTCAATGATCCTAAACAGCGAACTGCAGCTCAATGTGGTGGTGGTTCTCCACCTGCTGAATCACATCCAGGAGGTAGCTCGAAGCACGTACCTGTTCAGCATGCTTCCAAACACCAAAGAACTTCAAAACCTGCCTGGCTTCTAACCCTTGAAGTCATTACTGGAATCATGACGGGTTCTTTATTTATTGTTGCTGTGATCACTTCTCTTCGAAAATGCACGGGTAAATCCTCGATCATCATTCCGTGGAAGAAATTCTCAAGTGGGAAGGACCATGATAGCCTTTACATCGACACTGAGATGCTGAAAGACGTACCAAGCATCACTAGGCAAGAGCTTGATGTAGCCTGCGAAGATTTCAGTAATATCATTGGCTCCTCACCGGACAGTATAGTATACAAGGGCACCATGAAAGGTGGGCCTGAGATTGCTGTTATCTCAATATGCATTAAAGAAGAAAACTGGACAGACTATCTTGAGCTCTATTTTCAGCGAGAGGTGGCAGATCTAGCAAGACTAAATCAGGAGAATGTAGGAAAGTTGCTAGGCTATTGTAAAGAAAGCAGTCCATTTACAAGGATGTTGGTTTTTCAATACGCATCGAATGGAACATTATACGAGCACCTTCATTATGGAGAAGGTTGTTTCTCCTGGACACGACGTATGAATATTATCTTAGGCATTGCTCGTGGTCTTAAGTATCTTCATAGTGAACTCCAACCACCATTTACTATATCAGAGTTGAATTCTGGTTCTGTATATCTTACGGATGATTTCTCACCGAAGGCCAAGGAATACCTCGAATCGCCAGACGAGATGTTTCACTTGGTAGACCCAGAAGTGAAGCATTTTGCAGATGAAGATCTGAGGACGATATGCGAGGTGGTAAGTCTTTGCATTCATCCACAACCCACGAAGCTGATTTGTATGCGGGACATATGCAGCATGCTGGAGACCAGAATTGACACCTCGGTCTCTGTTGAGTTGAAGGCGTCTTCTCTTGCTTGGGCTGAACTTGCACTTTCTTCATAG 1869 42.86 MEYFASVQIFCMIFAVLTVTGDSLASDEASALKIFKQQISKDPKRVLSNWNLQVENPCNWSGIACSSDGGHVIKLDVSGALLQGFLAPSLGQLSFLQELYLHGNNLLGTIPXVSGALLQGFLAPSLGQLSFLQELYLHGNNLLGTIPKELGLLKKLKVLDLGRNQLSGSIPSEIGSLSDILKINFGSNGLTGRLPPELGNLRYLRELRLDRNKLQGSIPDGDILELTSNMHRMYASNATGLCHSTELKFADFSYNFFVGKVPKCLDYLPRSSFRGNCFHFNDPKQRTAAQCGGGSPPAESHPGGSSKHVPVQHASKHQRTSKPAWLLTLEVITGIMTGSLFIVAVITSLRKCTGKSSIIIPWKKFSSGKDHDSLYIDTEMLKDVPSITRQELDVACEDFSNIIGSSPDSIVYKGTMKGGPEIAVISICIKEENWTDYLELYFQREVADLARLNQENVGKLLGYCKESSPFTRMLVFQYASNGTLYEHLHYGEGCFSWTRRMNIILGIARGLKYLHSELQPPFTISELNSGSVYLTDDFSPKAKEYLESPDEMFHLVDPEVKHFADEDLRTICEVVSLCIHPQPTKLICMRDICSMLETRIDTSVSVELKASSLAWAELALSS 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3173175 3180411 + Cp4.1LG14g02190.1 Cpe14g00501 480885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00501 622 SMART tyrkin_6 397 596 IPR020635 GO:0004713|GO:0006468
Cpe14g00501 622 Pfam Protein tyrosine and serine/threonine kinase 401 516 IPR001245 GO:0004672|GO:0006468
Cpe14g00501 622 Gene3D Ribonuclease Inhibitor 115 177 IPR032675 -
Cpe14g00501 622 Gene3D Transferase(Phosphotransferase) domain 1 479 545 - -
Cpe14g00501 622 PANTHER PROTEIN MALE DISCOVERER 2 113 541 - -
Cpe14g00501 622 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 542 622 - -
Cpe14g00501 622 PANTHER PROTEIN MALE DISCOVERER 2 11 111 - -
Cpe14g00501 622 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 111 - -
Cpe14g00501 622 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 113 541 - -
Cpe14g00501 622 Gene3D Phosphorylase Kinase; domain 1 371 478 - -
Cpe14g00501 622 SUPERFAMILY L domain-like 27 269 - -
Cpe14g00501 622 Gene3D Ribonuclease Inhibitor 178 293 IPR032675 -
Cpe14g00501 622 SUPERFAMILY Protein kinase-like (PK-like) 377 541 IPR011009 -
Cpe14g00501 622 Pfam Leucine Rich Repeat 155 177 IPR001611 GO:0005515
Cpe14g00501 622 PANTHER PROTEIN MALE DISCOVERER 2 542 622 - -
Cpe14g00501 622 Gene3D Ribonuclease Inhibitor 25 114 IPR032675 -
Cpe14g00501 622 SMART LRR_typ_2 153 177 IPR003591 -
Cpe14g00501 622 SMART LRR_typ_2 93 117 IPR003591 -
Cpe14g00501 622 SMART LRR_typ_2 201 225 IPR003591 -
Cpe14g00501 622 SMART LRR_typ_2 129 152 IPR003591 -
Cpe14g00501 622 MobiDBLite consensus disorder prediction 288 314 - -
Cpe14g00501 622 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Cpe14g00501 622 ProSiteProfiles Protein kinase domain profile. 397 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00501 - - - csv:101211360 862.833
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe13g00162 Cpe14g00501 CCT
Cpe05g00322 Cpe14g00501 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00322 Cpe-Chr5:1800943 Cpe14g00501 Cpe-Chr14:3173175 5.53E-28 dispersed
Cpe09g00802 Cpe-Chr9:7448057 Cpe14g00501 Cpe-Chr14:3173175 8.09E-75 dispersed
Cpe13g00162 Cpe-Chr13:1215502 Cpe14g00501 Cpe-Chr14:3173175 1.60E-25 dispersed
Cpe14g00501 Cpe-Chr14:3173175 Cpe16g00667 Cpe-Chr16:6989639 2.93E-53 dispersed
Cpe01g00658 Cpe-Chr1:3814690 Cpe14g00501 Cpe-Chr14:3173175 2.72E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62833 PF07714 PK_Tyr_Ser-Thr 4.80E-11 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00501 Cpe_Chr14 FPKM 52.140625 56.611546 15.462285 12.73547 87.851906 99.636627 81.083679 8.430336 7.613089 6.45994