Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00505 AGAAAGATTGCTAATGATGAACCACCCAAAGAAAATAGCCATCTACCACAAGAAGATGGCAAAATTAGTGCAGTTTCAACGAGTACTCAAACCACAGAGTCTGGAGCAACACTAAGACGAGGGCCTTGCCGGATTCACCAATCTGTATTTGTATCGATCTCAACTATGTGGATCTTTGGATGGACCGGACCATCTGGGTTCTCAGCCCGTTCTACAGCAGAAGAAGTCACAGAAGGAATTGATGGGAATGGCCTCACTGCTATTGTTACAGTTTCAACGAGTACTCAAACCACAGAGTCTGGAGCAACACTAAGACGAGGGCCTTGCCGGATTCACCAATTTGTATTTGTATCGATCTCAACCATGTGGATCTTTGGATGGACCGGACCATCTGGGTTCTCAGCCCGTTCTACAGCAGAAGAAGTCACAGAAGGAATTGATGGGAATGGCCTCACTGCTATTGTTACAGGAGCTTCAAGTGGTCTCGGTGAAGAGACGACACGTGTTCTTGCATTACGAGGAGTCTATGTCATTATGGCTGTAAGAAATGTTGAAGCAGGGAAAAAAGTAAAAGAAGCAGTACTGAAAGAATCCCCTTCAGCCAAAATTGATGTCATGGAGTTAGATCTTAGTTCAATGGAATCTGTAAGGAAATTTGCATCAGATTACATTGCATCAGGCCGTGCACTAAATATTCTCATGAACAATGCGGGCGTTATGGCGACGCCTTTTATGCTTTCGCATGACGGCATAGAGTTGCAGTTTGCAACAAACCATATAGGACATTTTCTTCTGACGAACCTTCTGCTGGAAACTATGAAAAAAACTGTGGTTGAAAGCAAAAAGGAGGGAAGGATTGTTAATCTGTCGTCGGAGGGGCACCGATTGACATATGGCGAAGGAGTTCGTTTCGATAAAATCAATGACGAATCAGAGTACAGAACTATCTTTGCTTATGGACAATCAAAGCTTTCCAACATATTGCATGCCAAAGAGCTTGCCAGGCGGTTGAAGGAAGAAGGGGTGGAAATAACAGCCAACGCCCTTCATCCTGGAGCAATTGCTGCTACCAACCTACTACGCTTCCATGGTCTCATTAATGCTGTTGCTACTTCCATTGCTACATTTGTGCTTAAAAACGTCCAGCAGGGAGCGGCGACTCAGTGCTATGTAGCATTGAATCCCCAAGTCAAAGGGGTAAGTGGAGAGTATTTTGTGGATAGTAATATAGCCAACCCAACCAATCATGCCAAAGATATGGAATTGGCCAAGAAACTGTGGGATTTCAGTATGGATCTAACCACCCCTAAATAA 1314 44.22 RKIANDEPPKENSHLPQEDGKISAVSTSTQTTESGATLRRGPCRIHQSVFVSISTMWIFGWTGPSGFSARSTAEEVTEGIDGNGLTAIVTVSTSTQTTESGATLRRGPCRIHQFVFVSISTMWIFGWTGPSGFSARSTAEEVTEGIDGNGLTAIVTGASSGLGEETTRVLALRGVYVIMAVRNVEAGKKVKEAVLKESPSAKIDVMELDLSSMESVRKFASDYIASGRALNILMNNAGVMATPFMLSHDGIELQFATNHIGHFLLTNLLLETMKKTVVESKKEGRIVNLSSEGHRLTYGEGVRFDKINDESEYRTIFAYGQSKLSNILHAKELARRLKEEGVEITANALHPGAIAATNLLRFHGLINAVATSIATFVLKNVQQGAATQCYVALNPQVKGVSGEYFVDSNIANPTNHAKDMELAKKLWDFSMDLTTPK 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3196950 3207623 + Cp4.1LG14g02170.1 Cpe14g00505 480889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00505 437 MobiDBLite consensus disorder prediction 19 37 - -
Cpe14g00505 437 MobiDBLite consensus disorder prediction 1 37 - -
Cpe14g00505 437 Pfam short chain dehydrogenase 152 293 IPR002347 -
Cpe14g00505 437 Gene3D - 145 436 - -
Cpe14g00505 437 MobiDBLite consensus disorder prediction 1 17 - -
Cpe14g00505 437 PANTHER RETINOL DEHYDROGENASE 123 434 - -
Cpe14g00505 437 PRINTS Glucose/ribitol dehydrogenase family signature 278 294 IPR002347 -
Cpe14g00505 437 PRINTS Glucose/ribitol dehydrogenase family signature 152 169 IPR002347 -
Cpe14g00505 437 PRINTS Glucose/ribitol dehydrogenase family signature 319 338 IPR002347 -
Cpe14g00505 437 PRINTS Glucose/ribitol dehydrogenase family signature 342 359 IPR002347 -
Cpe14g00505 437 PRINTS Glucose/ribitol dehydrogenase family signature 228 239 IPR002347 -
Cpe14g00505 437 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 150 411 IPR036291 -
Cpe14g00505 437 CDD retinol-DH_like_SDR_c_like 150 427 - -
Cpe14g00505 437 PANTHER RETINOL DEHYDROGENASE 57 100 - -
Cpe14g00505 437 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 57 100 - -
Cpe14g00505 437 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 123 434 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00505 - - K19329 csv:101210378 569.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01087 Cpe-Chr2:9956456 Cpe14g00505 Cpe-Chr14:3196950 1.47E-32 dispersed
Cpe03g00129 Cpe-Chr3:648200 Cpe14g00505 Cpe-Chr14:3196950 8.56E-114 dispersed
Cpe08g01155 Cpe-Chr8:8589141 Cpe14g00505 Cpe-Chr14:3196950 2.46E-130 dispersed
Cpe13g00263 Cpe-Chr13:2035885 Cpe14g00505 Cpe-Chr14:3196950 5.49E-07 dispersed
Cpe14g00505 Cpe-Chr14:3196950 Cpe18g00854 Cpe-Chr18:7872200 2.98E-66 dispersed
Cpe14g00505 Cpe-Chr14:3196950 Cpe05g00646 Cpe-Chr5:3947924 3.04E-155 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g310 Blo02g01124 Blo03g00227 . Bda08g00502 Bpe05g00662 . . . . Cmo16g00644 . Cma15g01280 . Car15g01154 . Cpe14g00505 . . . . . . . . Cla07g00772 Cam07g0831 Cec07g0886 Cco07g0863 Clacu07g0808 Cmu07g0814 Cre07g1168 Cone8ag0615 . . Cone9ag0789 . Csa05g00120 Chy09g01373 Cme07g01630 . . . . . . Bma05g00836 . . . . . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 Cla01g00106 Cam01g0105 Cec01g0106 Cco01g0107 Clacu01g0103 Cmu01g0104 Cre09g2402 Lsi09g00092 Csa04g00593 . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00505 Cpe_Chr14 FPKM 6.909524 4.814034 3.428894 5.806355 8.333673 8.364454 10.581097 11.62064 10.2983 9.714474