Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00516 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCTGCTATCGTCTTTTGCGCTGCTGACGAAGCCGCGCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCGAGTGACGTTCCCCGTTGTGATATATGCGAGAACGCACCTGGTAGGGAGGTCCTTCCTTTTGTTTTTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCACGTTGGAGGGAAACGAACACATAAGCGATACCTTTTGCTAAGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCATCTCCACATTCTAAGGTTTCCAATGATATTAGTAAAGGACATAACCTGCCACCACCACATAAAGTGACCGTGGAAGACAACCAACAGAATCATCACCGACTATCACCTGTTCGAGAAGCTAACGACGATGGTCATGCCGAGTCCGACACGAAAATGATTGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGTGCAAATGCTTTCCTCATCTCTTCCTCCTTGA 612 46.24 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPGREVLPFVFAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVSNDISKGHNLPPPHKVTVEDNQQNHHRLSPVREANDDGHAESDTKMIDLNMKPQRVHGQAANNQVQMLSSSLPP 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3264555 3268026 + Cp4.1LG14g02000.1 Cpe14g00516 480900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00516 203 CDD Bbox1_BBX-like 4 47 - -
Cpe14g00516 203 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 197 - -
Cpe14g00516 203 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Cpe14g00516 203 SMART bboxneu5 1 47 IPR000315 GO:0008270
Cpe14g00516 203 SMART bboxneu5 51 105 IPR000315 GO:0008270
Cpe14g00516 203 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 197 - -
Cpe14g00516 203 MobiDBLite consensus disorder prediction 148 168 - -
Cpe14g00516 203 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cpe14g00516 203 Gene3D Classic Zinc Finger 2 105 - -
Cpe14g00516 203 MobiDBLite consensus disorder prediction 115 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00516 - - - csv:101208899 366.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00516 Cpe-Chr14:3264555 Cpe19g00845 Cpe-Chr19:6255132 1.06E-55 dispersed
Cpe01g00702 Cpe-Chr1:4064921 Cpe14g00516 Cpe-Chr14:3264555 1.87E-125 wgd
Cpe10g00649 Cpe-Chr10:3738125 Cpe14g00516 Cpe-Chr14:3264555 1.48E-69 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00334 CCT 6 333 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 8.4e-45 178.3
Cpe07g00334 CCT 4 333 C2C2-CO-like Transcription Factor Family AT3G02380 50.6 7.7e-43 171.8
Cpe11g00283 CCT 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 2.1e-83 306.6
Cpe07g00334 CCT 1 333 C2C2-CO-like Transcription Factor Family AT5G24930 58.9 6.5e-77 285.0
Cpe04g01287 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 51.3 6.7e-58 221.9
Cpe18g00605 CCT,CST 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.4 4.8e-56 215.7
Cpe04g01287 CCT,CST 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 2.8e-64 243.0
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 5.8e-89 325.1
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.2e-87 319.3
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.4 2.7e-86 316.2
Cpe16g00362 CST 25 293 C2C2-CO-like Transcription Factor Family AT3G07650 50.5 6.7e-53 205.3
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.4e-87 320.5
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.1e-84 310.8
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.6e-84 308.5
Cpe16g00362 CST 88 293 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 1.5e-49 194.1
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.4e-87 320.5
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.1e-84 310.8
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.6e-84 308.5
Cpe16g00362 CST 88 293 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 1.5e-49 194.1
Cpe04g00107 CCT,CST,ECH 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.6 2.7e-53 206.5
Cpe15g00559 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 52.9 1.2e-48 191.0
Cpe01g00595 CST 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 55.2 5.0e-57 218.8
Cpe01g00702 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 1.5e-55 213.0
Cpe14g00516 . 1 193 C2C2-CO-like Transcription Factor Family AT2G21320 58.5 1.1e-53 206.8
Cpe19g00845 CST 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 4.6e-49 191.4
Cpe10g00649 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 8.8e-48 187.2
Cpe01g00702 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 3.2e-56 215.3
Cpe14g00516 . 1 192 C2C2-CO-like Transcription Factor Family AT4G38960 61.5 2.7e-55 212.2
Cpe19g00845 CST 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 66.9 1.5e-50 196.4
Cpe10g00649 CST 1 106 C2C2-CO-like Transcription Factor Family AT4G38960 82.1 3.2e-48 188.7
Cpe04g00107 CCT,CST,ECH 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 1.4e-54 210.3
Cpe15g00559 CCT,CST,ECH 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 55.6 5.9e-50 194.9
Cpe07g00385 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.0 1.7e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004570 3 1 3 2 1 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 2 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50514 PF00643 zf-B_box 1.20E-05 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00516 Cpe_Chr14 FPKM 12.295532 10.080327 13.564703 14.425002 6.055084 3.26371 5.055696 8.223387 12.869363 10.888907