Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe14g00516 | ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCTGCTATCGTCTTTTGCGCTGCTGACGAAGCCGCGCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCGAGTGACGTTCCCCGTTGTGATATATGCGAGAACGCACCTGGTAGGGAGGTCCTTCCTTTTGTTTTTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCACGTTGGAGGGAAACGAACACATAAGCGATACCTTTTGCTAAGGCAGAGGGTCGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCATCTCCACATTCTAAGGTTTCCAATGATATTAGTAAAGGACATAACCTGCCACCACCACATAAAGTGACCGTGGAAGACAACCAACAGAATCATCACCGACTATCACCTGTTCGAGAAGCTAACGACGATGGTCATGCCGAGTCCGACACGAAAATGATTGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGTGCAAATGCTTTCCTCATCTCTTCCTCCTTGA | 612 | 46.24 | MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPGREVLPFVFAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVSNDISKGHNLPPPHKVTVEDNQQNHHRLSPVREANDDGHAESDTKMIDLNMKPQRVHGQAANNQVQMLSSSLPP | 203 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 3264555 | 3268026 | + | Cp4.1LG14g02000.1 | Cpe14g00516 | 480900 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe14g00516 | 203 | CDD | Bbox1_BBX-like | 4 | 47 | - | - | |
| Cpe14g00516 | 203 | PANTHER | B-BOX ZINC FINGER PROTEIN 19 | 1 | 197 | - | - | |
| Cpe14g00516 | 203 | Pfam | B-box zinc finger | 3 | 42 | IPR000315 | GO:0008270 | |
| Cpe14g00516 | 203 | SMART | bboxneu5 | 1 | 47 | IPR000315 | GO:0008270 | |
| Cpe14g00516 | 203 | SMART | bboxneu5 | 51 | 105 | IPR000315 | GO:0008270 | |
| Cpe14g00516 | 203 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 197 | - | - | |
| Cpe14g00516 | 203 | MobiDBLite | consensus disorder prediction | 148 | 168 | - | - | |
| Cpe14g00516 | 203 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Cpe14g00516 | 203 | Gene3D | Classic Zinc Finger | 2 | 105 | - | - | |
| Cpe14g00516 | 203 | MobiDBLite | consensus disorder prediction | 115 | 168 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe14g00516 | Cpe-Chr14:3264555 | Cpe19g00845 | Cpe-Chr19:6255132 | 1.06E-55 | dispersed | |
| Cpe01g00702 | Cpe-Chr1:4064921 | Cpe14g00516 | Cpe-Chr14:3264555 | 1.87E-125 | wgd | |
| Cpe10g00649 | Cpe-Chr10:3738125 | Cpe14g00516 | Cpe-Chr14:3264555 | 1.48E-69 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50514 | PF00643 | zf-B_box | 1.20E-05 | No_clan | Cpe | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe14g00516 | - | - | csv:101208899 | 366.311 |