Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00520 ATGATTTCCTCGCCCAGCGGCATTGCGCCGTCGTATAAGACAGAGATTTATGCCCTTACTGCTAATTCGGCTTTTGTTCCTCTGAGGAGAGCATTTCAACATAGAAGCAAATGTGTTATGAACAGGAGAAGTTTTGCCTTTAGGGGAATTGTGGCTTCTGAAGTTTCAGTTATGGGCTCTTCTGTGGTTATGCAGCCTGCTCAAGGGATTGAAAGATTGCCTTTCAAGCCAGAAGGTTATAACTTCTGGACGTGGCGGGGTCACAAGATACATTATGTTGTACAAGGGGAAGGTCCTCCAATAGTTCTTATTCATGGTTTTGGTGCTTCTGTATTTCATTGGAGCCTCGGAGGATTTACCGCCTTGGTTTCAGCAGCAGGGTCGCCGGAGCAAGTTCGCGGAGTCGTATTACTAAACTCCGCCGGGCAGTTCGGAGACACAAATAAGTTGACAGATGAGCCAGAAGAAGAAACAAGCTTCCAGAAATTCCTCGTGAAGCCATTGAAAGACTTTTTTCAGCGGATCTTTCTTGGAGTTCTTTTCTGGCAAACTAAGCAACCAGCTAGAATTGTTTCTGTTTTGAAGAGTGTGTACATAAATTCTGAAAATGTGGATGACTATCTGGTAGAGTCTATAACAAGGCCAGCAGCCGACCCGAATGCTAGAGAAGTTTATTACAGATTGATGACGAGATTCATGTTCAATCAACGCAAATATACACTAAACAGTGTGCTGAGTGAGTTGTGTTGCCCATTGTTGTTGCTGTGGGGTGACTTAGATCCATGGGTTGGACCTGCTAAGGCCAACAGAATCAAAGAGTTCTATCCCAACACAAGCGTAGTACATTTGAAAGCAGGCCATTGCCCACATGATGAAGTTCCAGAGCTTGTCAACTCAGCTTTGATGGATTGGCTGGCAACCCTGCAACAAGCTCAACCAACGCTCTGA 948 45.04 MISSPSGIAPSYKTEIYALTANSAFVPLRRAFQHRSKCVMNRRSFAFRGIVASEVSVMGSSVVMQPAQGIERLPFKPEGYNFWTWRGHKIHYVVQGEGPPIVLIHGFGASVFHWSLGGFTALVSAAGSPEQVRGVVLLNSAGQFGDTNKLTDEPEEETSFQKFLVKPLKDFFQRIFLGVLFWQTKQPARIVSVLKSVYINSENVDDYLVESITRPAADPNAREVYYRLMTRFMFNQRKYTLNSVLSELCCPLLLLWGDLDPWVGPAKANRIKEFYPNTSVVHLKAGHCPHDEVPELVNSALMDWLATLQQAQPTL 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3298733 3302313 + Cp4.1LG14g01990.1 Cpe14g00520 480904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00520 315 PANTHER PHEOPHYTINASE, CHLOROPLASTIC-LIKE ISOFORM X1 14 115 - -
Cpe14g00520 315 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 115 312 - -
Cpe14g00520 315 PANTHER PHEOPHYTINASE, CHLOROPLASTIC-LIKE ISOFORM X1 115 312 - -
Cpe14g00520 315 Pfam Alpha/beta hydrolase family 91 299 IPR000073 -
Cpe14g00520 315 SUPERFAMILY alpha/beta-Hydrolases 81 305 IPR029058 -
Cpe14g00520 315 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 14 115 - -
Cpe14g00520 315 Gene3D alpha/beta hydrolase 113 311 IPR029058 -
Cpe14g00520 315 Gene3D alpha/beta hydrolase 78 112 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00520 - - - vvi:100261647 388.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00848 Cpe-Chr12:7498916 Cpe14g00520 Cpe-Chr14:3298733 9.75E-22 dispersed
Cpe01g00698 Cpe-Chr1:4039611 Cpe14g00520 Cpe-Chr14:3298733 1.42E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g993 Blo04g00911 . . . Bpe15g00423 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1635 . . . Chy07g01233 . . . . . . . . . . . . . . . . . Cpe14g00520 . . . . . . . . . . . . . . . Csa04g00575 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010323 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00520 Cpe_Chr14 FPKM 1.341026 1.068489 2.375028 2.322765 2.72326 3.31353 4.337914 2.727734 3.097996 3.471955