Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe14g00525 | ATGTCGTTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATTAAAGATGGAATTGGGAGCATTTCGAAACGAGGAGAAGAAGGGAGTAGGCATTGGCGCAACCGAACAATGTCACACATTGCACCTGATCAAGAAGAACATTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTACCCCCTGAATTACTTTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTTCTCGAGCTGTAGTCGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTCAGTTTGGCTCCTTCGGAGGACGAAAAACATAAATTGTTGTTAGCAGCCAAGAGGGTCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTAGTAGCTGATGATTTTTCTCGAGCAAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGATAGCCAGCCTCCTTGTGACCCTGTAGCTCAGCAAAATAGTCGATCAAGCCGAAGATTTCACTCTAAGCAAGTCTCTCCTAGGGTACCTGCATGTAACTACAGTGTAGGTACAGTTTCTTATGAACTTAATGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCGTCATGCAAACGATTCCAGTTTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACTTCGTTCACACACTCTGTCGATGACCACCTGTCTATCGAGTCCGATTCTATGAGAAAGGATTCAGGCAAGGACTTCGGCTCAAAGACCCCATCAGAACCAGCAGTTCAGGGATCAGATGAATCCTTGGTGCTTAAAAACAAGGCACCAAGATGGCATGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACGGTGGCATCGGTTAAGAACTTCCAACTCGTTGCAGCTGTTGATGAATCTCACAATGTTTCAGTGGAAGAACAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAGTGA | 1245 | 45.86 | MSFKSFVRELREIKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEEHSPLELIQQGRWANLPPELLLDIIRRVEESETSWPSRAVVVFCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFSLAPSEDEKHKLLLAAKRVRRAAGTDFIISLVADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPVAQQNSRSSRRFHSKQVSPRVPACNYSVGTVSYELNVLRTRGPRRMQCVMQTIPVSSIQEGGTAPTPTSFTHSVDDHLSIESDSMRKDSGKDFGSKTPSEPAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDESHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE | 414 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 3322335 | 3325485 | + | Cp4.1LG14g01960.1 | Cpe14g00525 | 480909 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe14g00525 | 414 | ProSitePatterns | Tub family signature 2. | 399 | 414 | IPR018066 | - | |
| Cpe14g00525 | 414 | Gene3D | Tubby Protein; Chain A | 116 | 414 | IPR025659 | - | |
| Cpe14g00525 | 414 | PANTHER | TUBBY-RELATED | 1 | 414 | - | - | |
| Cpe14g00525 | 414 | ProSitePatterns | Tub family signature 1. | 342 | 355 | IPR018066 | - | |
| Cpe14g00525 | 414 | PRINTS | Tubby superfamily signature | 172 | 188 | IPR000007 | - | |
| Cpe14g00525 | 414 | PRINTS | Tubby superfamily signature | 188 | 212 | IPR000007 | - | |
| Cpe14g00525 | 414 | PRINTS | Tubby superfamily signature | 237 | 264 | IPR000007 | - | |
| Cpe14g00525 | 414 | PRINTS | Tubby superfamily signature | 324 | 341 | IPR000007 | - | |
| Cpe14g00525 | 414 | PRINTS | Tubby superfamily signature | 342 | 358 | IPR000007 | - | |
| Cpe14g00525 | 414 | PRINTS | Tubby superfamily signature | 371 | 390 | IPR000007 | - | |
| Cpe14g00525 | 414 | PRINTS | Tubby superfamily signature | 392 | 414 | IPR000007 | - | |
| Cpe14g00525 | 414 | MobiDBLite | consensus disorder prediction | 293 | 320 | - | - | |
| Cpe14g00525 | 414 | MobiDBLite | consensus disorder prediction | 209 | 224 | - | - | |
| Cpe14g00525 | 414 | MobiDBLite | consensus disorder prediction | 208 | 227 | - | - | |
| Cpe14g00525 | 414 | Gene3D | - | 51 | 105 | - | - | |
| Cpe14g00525 | 414 | SUPERFAMILY | Tubby C-terminal domain-like | 106 | 414 | IPR025659 | - | |
| Cpe14g00525 | 414 | Pfam | Tub family | 118 | 409 | IPR000007 | - | |
| Cpe14g00525 | 414 | Pfam | F-box domain | 57 | 103 | IPR001810 | GO:0005515 | |
| Cpe14g00525 | 414 | SUPERFAMILY | F-box domain | 51 | 101 | IPR036047 | GO:0005515 | |
| Cpe14g00525 | 414 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 414 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00120 | Cpe-Chr2:604113 | Cpe14g00525 | Cpe-Chr14:3322335 | 0 | dispersed | |
| Cpe03g01389 | Cpe-Chr3:11176850 | Cpe14g00525 | Cpe-Chr14:3322335 | 1.19E-151 | dispersed | |
| Cpe06g00104 | Cpe-Chr6:513960 | Cpe14g00525 | Cpe-Chr14:3322335 | 0 | dispersed | |
| Cpe14g00302 | Cpe-Chr14:1776558 | Cpe14g00525 | Cpe-Chr14:3322335 | 1.51E-163 | dispersed | |
| Cpe14g00525 | Cpe-Chr14:3322335 | Cpe17g00002 | Cpe-Chr17:23583 | 3.10E-156 | dispersed | |
| Cpe01g00695 | Cpe-Chr1:4029886 | Cpe14g00525 | Cpe-Chr14:3322335 | 0 | wgd | |
| Cpe14g00525 | Cpe-Chr14:3322335 | Cpe19g00814 | Cpe-Chr19:6094376 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50515 | PF01167 | Tub | 1.10E-106 | CL0395 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe14g00525 | K19600 | - | csv:101205595 | 771.926 |